Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    29   1.9  
11_01_0385 + 2915532-2916482                                           29   2.6  
12_01_0135 + 1042889-1044255,1045368-1045809                           28   3.4  
11_01_0133 + 1121392-1122731,1123417-1123858                           28   3.4  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    28   3.4  
04_03_0865 + 20402711-20404057                                         28   3.4  
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    28   4.5  
11_04_0451 - 17863381-17864808                                         27   5.9  
07_03_1790 - 29536497-29536625,29536734-29536848,29537357-295375...    27   5.9  

>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 401 PPRHPQF-LAPRANALSPLPP 460
           PPRHP+  LAP AN   P PP
Sbjct: 205 PPRHPRRRLAPHANRRRPAPP 225


>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 LQPVHPPRHPQFLAPRANALSPLPP 460
           L P HPP  P +  P  N   PLPP
Sbjct: 203 LPPFHPPPTPAWPHPGGNKWPPLPP 227


>12_01_0135 + 1042889-1044255,1045368-1045809
          Length = 602

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 PVHPPRHPQFLAPRANALSPLPPRVGAV 475
           P  PP HP  L P A A  P P  V A+
Sbjct: 137 PPPPPSHPALLPPDATAPPPPPTSVAAL 164


>11_01_0133 + 1121392-1122731,1123417-1123858
          Length = 593

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 392 PVHPPRHPQFLAPRANALSPLPPRVGAV 475
           P  PP HP  L P A A  P P  V A+
Sbjct: 136 PPPPPSHPALLPPDATAPPPPPTSVAAL 163


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 400 PAAAPPILGAQGKCPVPPPS*SG 468
           P  APP+  AQG  P PPP  +G
Sbjct: 258 PRDAPPMHHAQGNVPPPPPPNAG 280


>04_03_0865 + 20402711-20404057
          Length = 448

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 364 VKLTISIFTTRAPAAAPPILGAQGKCP 444
           +K  +     + P AAPP + A+GKCP
Sbjct: 272 IKRMVGSEKPKHPKAAPPAMVAEGKCP 298


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 392 PVHPPRHPQFLAPRANALSPLPPRVGAV 475
           PV PP  P  L P A A+ PLPP+  AV
Sbjct: 26  PVPPPPPPP-LPPAAAAVEPLPPQPVAV 52


>11_04_0451 - 17863381-17864808
          Length = 475

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 392 PVHPPRHPQFLAPRANALSPL 454
           P  PP  P+ LAP A+ALS L
Sbjct: 60  PAFPPSAPRLLAPLASALSAL 80


>07_03_1790 -
           29536497-29536625,29536734-29536848,29537357-29537508,
           29537589-29537737,29538936-29539098,29539575-29539686,
           29539791-29540152
          Length = 393

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 358 LLVKLTISIFTTRAPAAAPPILGAQGKCPVPPPS 459
           LL+ L  S F + +P  AP      G+CP PPP+
Sbjct: 49  LLLLLLRSSFASVSPGPAPG--SGTGECPPPPPA 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,577
Number of Sequences: 37544
Number of extensions: 255843
Number of successful extensions: 868
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)