Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   1.5  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         29   2.6  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   28   3.4  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)              27   6.0  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 391 TRAPAAAPPILGAQGKCPVPPP 456
           TRAP   PPI  A G  P PPP
Sbjct: 135 TRAPPPPPPIAPATGGPPPPPP 156


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 398 HPPRHPQFLAPRANALSPLPPRVGAV 475
           HP  H Q L   ANA++P+PP+  ++
Sbjct: 921 HPLLHDQSLPASANAVAPVPPQADSL 946


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 395 VHPPRHPQFLAPRANAL--SPLPPRVG 469
           +H PRHPQ +  R+ +L   P+PP  G
Sbjct: 178 IHQPRHPQHVLVRSQSLPEEPVPPGRG 204


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 187 RLYRSTALV*KKNPEMTDSSTQLTNR*TYKLKISAID 297
           RL +   L    NP+ T S   L +  +YKL I AID
Sbjct: 8   RLQQKVXLFPNANPKQTISGLSLQDNKSYKLAIQAID 44


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 312 NNPLSNDFL*FLANISLGKIDYINFYNPCTRRGTPNSWRPGQMPCPPSLLEWAL 473
           N  + ND L +  N   G+I      +P   R T     PG  P  P+L +W L
Sbjct: 700 NGTMLNDVLSYTVNALFGRI------SPLVTRPTRTVDVPGYYPLEPALAQWLL 747


>SB_35047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 94  WGRVLGNPCASYLFAIEWLQQ-FALK 168
           WGR +G  C+ +   I++LQQ F +K
Sbjct: 136 WGRAIGKVCSGFEVEIKYLQQNFPIK 161


>SB_30249| Best HMM Match : Extensin_2 (HMM E-Value=0.035)
          Length = 624

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 183 QLHHDFEGELLKPLNRKKITSTRITK 106
           +LHH+   ELL PL +K+I+ + +++
Sbjct: 513 RLHHELSMELLPPLMKKRISISTLSR 538


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 375 SQFYQEKYSLKITRNRCL 322
           SQF++E  S K+TR RC+
Sbjct: 181 SQFFKEDASFKLTRKRCI 198


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 378 INFYNPCTRRGTPNSWRPGQMPC 446
           +N YNPCT R TP++ R    PC
Sbjct: 713 MNRYNPCTERYTPSTER--YTPC 733


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 400 PAAAPPILGAQGKCPVP 450
           P AAPPI GA  KC  P
Sbjct: 152 PNAAPPIEGATSKCDTP 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,807
Number of Sequences: 59808
Number of extensions: 281003
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)