Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033786-1|AAH33786.2|  465|Homo sapiens ring finger protein 38 ...    29   6.3  
AL354935-3|CAO03541.1|  465|Homo sapiens ring finger protein 38 ...    29   6.3  
AL354935-2|CAO03540.1|  515|Homo sapiens ring finger protein 38 ...    29   6.3  
AL354935-1|CAH70194.1|  439|Homo sapiens ring finger protein 38 ...    29   6.3  
AL161792-4|CAO03554.1|  465|Homo sapiens ring finger protein 38 ...    29   6.3  
AL161792-3|CAO03553.1|  515|Homo sapiens ring finger protein 38 ...    29   6.3  
AL161792-1|CAI16895.1|  439|Homo sapiens ring finger protein 38 ...    29   6.3  
AK024996-1|BAB15050.1|  332|Homo sapiens protein ( Homo sapiens ...    29   6.3  
AF394047-1|AAM73697.1|  432|Homo sapiens RING finger protein 38 ...    29   6.3  

>BC033786-1|AAH33786.2|  465|Homo sapiens ring finger protein 38
           protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 323 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 353


>AL354935-3|CAO03541.1|  465|Homo sapiens ring finger protein 38
           protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 323 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 353


>AL354935-2|CAO03540.1|  515|Homo sapiens ring finger protein 38
           protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 373 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 403


>AL354935-1|CAH70194.1|  439|Homo sapiens ring finger protein 38
           protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 297 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 327


>AL161792-4|CAO03554.1|  465|Homo sapiens ring finger protein 38
           protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 323 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 353


>AL161792-3|CAO03553.1|  515|Homo sapiens ring finger protein 38
           protein.
          Length = 515

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 373 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 403


>AL161792-1|CAI16895.1|  439|Homo sapiens ring finger protein 38
           protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 297 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 327


>AK024996-1|BAB15050.1|  332|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21343 fis, clone COL02679. ).
          Length = 332

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 190 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 220


>AF394047-1|AAM73697.1|  432|Homo sapiens RING finger protein 38
           protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 377 YQFLQPVHPPRHPQFLAPRANALSPLPPRVG 469
           Y+  QP+ PP +   L P   ++ P+PP VG
Sbjct: 290 YRSQQPIPPPPYHPSLLPYVLSMLPVPPAVG 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,478,526
Number of Sequences: 237096
Number of extensions: 1392284
Number of successful extensions: 4008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)