Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 372 DYINFYNP-CTRRGTPNSWR 428
           DY+NFY P C   GT NS R
Sbjct: 418 DYVNFYTPTCKYAGTKNSER 437


>Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.2 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 106 LGNPCASYLFAIEWLQQFAL 165
           +GNPCA Y+   E LQQ  +
Sbjct: 78  IGNPCAGYIVVSEALQQITV 97


>Z71178-1|CAA94874.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.1 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 388 TTRAPAAAPPILGAQGKCPVPPPS*SGRC 474
           T RAPA  PP      KCP  PP  SG C
Sbjct: 134 TIRAPAC-PPRNQDCIKCPAGPPGPSGTC 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,534
Number of Sequences: 27780
Number of extensions: 216282
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)