Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   0.73 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 321 VDCYIMKGIYCRNFKFVGLAVCELR 247
           V C +M GIYCR + +    V  +R
Sbjct: 203 VPCIVMLGIYCRLYCYAQKHVKSIR 227


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 84  LYTLKSMGIIKWEH 43
           +YTLK  G+IK E+
Sbjct: 511 IYTLKRKGLIKSEN 524


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 84  LYTLKSMGIIKWEH 43
           +YTLK  G+IK E+
Sbjct: 511 IYTLKRKGLIKSEN 524


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 84  LYTLKSMGIIKWEH 43
           +YTLK  G+IK E+
Sbjct: 511 IYTLKRKGLIKSEN 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,204
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)