Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A17
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    28   2.8  
At1g77030.1 68414.m08970 glycine-rich protein                          27   5.0  
At5g62720.2 68418.m07871 integral membrane HPP family protein co...    27   8.7  
At5g62720.1 68418.m07872 integral membrane HPP family protein co...    27   8.7  
At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related conta...    27   8.7  
At3g44090.1 68416.m04723 F-box family protein contains F-box dom...    27   8.7  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 RAPAAAPPILGAQGKCPVPPPS*SGR 471
           R  ++ PP LGA+G    PPP  +GR
Sbjct: 747 RGTSSGPPPLGAKGSNAPPPPPPAGR 772


>At1g77030.1 68414.m08970 glycine-rich protein
          Length = 349

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 459 GGRGDRAFALGAKNWGCRGGCTGCKN 382
           GGRG R  A G +  G RGG  G ++
Sbjct: 205 GGRGGRGGARGGRGGGARGGRGGSRD 230


>At5g62720.2 68418.m07871 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 200

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 147 PLNRKKITSTRITKHSPPKTILYTLKSMGIIKWEHII 37
           PL R+ ITST  +K SP    + +  S+GI  ++  +
Sbjct: 10  PLLRRNITSTTASKSSPMLANVSSRHSLGISTYDEFL 46


>At5g62720.1 68418.m07872 integral membrane HPP family protein
           contains Pfam domain, PF04982: HPP family
          Length = 243

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 147 PLNRKKITSTRITKHSPPKTILYTLKSMGIIKWEHII 37
           PL R+ ITST  +K SP    + +  S+GI  ++  +
Sbjct: 10  PLLRRNITSTTASKSSPMLANVSSRHSLGISTYDEFL 46


>At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 447

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 150 SAVRPQSHGEAVKALPVNSVS 212
           SAV+P SH EAV ++  N++S
Sbjct: 296 SAVKPHSHEEAVASVEANNLS 316


>At3g44090.1 68416.m04723 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 204 C*PVEPLQLHHDFEGELLKPLNRKKITSTRITKHSPPKTILYTLKSMGII 55
           C  +E L +HH F   L+   N KK++ T    +   ++ + TL +  ++
Sbjct: 202 CPALEDLTIHHMFRPFLISSKNLKKLSVTINFSYYVDRSTILTLDTPNVV 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,530
Number of Sequences: 28952
Number of extensions: 200294
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)