Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A16
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 175 1e-44
03_01_0290 + 2246791-2247027,2248089-2248346 175 1e-44
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 31 0.74
09_01_0142 - 2103224-2103864,2104264-2104399 29 1.7
01_06_1794 - 39919363-39920025 29 2.3
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 29 3.0
02_03_0131 - 15576422-15577021 29 3.0
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.0
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 4.0
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078 28 4.0
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 28 5.2
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 27 6.9
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 6.9
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 27 6.9
09_02_0549 + 10485415-10486107 27 9.1
08_01_0293 - 2367453-2368088 27 9.1
06_01_1185 + 10183666-10184469 27 9.1
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892... 27 9.1
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.1
04_03_0151 + 11905926-11906618 27 9.1
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 82/155 (52%), Positives = 111/155 (71%)
Frame = +2
Query: 56 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 416 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPY 520
A G+V++ KRQP PK +V GA + PIPY
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLET-VTPIPY 154
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 82/155 (52%), Positives = 110/155 (70%)
Frame = +2
Query: 56 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 416 AAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPIPY 520
A G+V++ KRQP PK +V GA + PIPY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLET-VTPIPY 154
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.7 bits (66), Expect = 0.74
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 416 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 514
+ +Q +P P + IVS + P +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 416 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 514
+ + +Q +P P +VS + P +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 377 RVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKPVLLAPI 514
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 380 VKENERLLKEAKAA--GKVVNLKRQPAPPKAAH-IVSGAEKPVLLAP 511
V+ +++ LK +A G N R P PP+A++ I GA P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>02_03_0131 - 15576422-15577021
Length = 199
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 256 DRTRSRRDREQAR-PRQDPTE---THQHPHRAREALQVQAGLPQARQ 384
+R R RDR+++R P D + +H H HR R + AG + R+
Sbjct: 54 ERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSSPSPDAGRHKRRR 100
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 155 YKVGDIVDIRGNGAVQKGMPHKVY 226
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Frame = +1
Query: 205 GYATQSIPR*DRACLQCDRTRSR--------RDREQARPRQDPTETHQHPHR-----ARE 345
G A + P R+ +C T SR R A + PT + P R ARE
Sbjct: 106 GGAAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPPPREAAMAARE 165
Query: 346 ALQVQAGLPQARQGERKAVEG 408
++QA L ++R G R+A++G
Sbjct: 166 RRRIQARLNRSRSGARRALKG 186
>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
Length = 514
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 196 SAIAPNVNDVSHFVHFHVRGKWNSSMCAESSGEQVPGTTTITLGVCHIL 50
+A A +SH++ H R W + A + + GT T G+ H+L
Sbjct: 38 TAAATTPQRISHYLAHHPRATWEALSAAFPAADHDSGTAATTRGL-HLL 85
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 231 PWYTLCGIPFCTAPLPLMSTM 169
P T CGI F TA LPL+ M
Sbjct: 430 PNVTTCGIQFATAQLPLLQLM 450
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Frame = +2
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKH--SKCRQDFLK-RVKENERLLK 406
T R NV +IV VRGRI+P I ++H + +C+++ +++ LL+
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLR 197
Query: 407 EAKAAGKVVNLKRQPAPPKA--AHIVSGAEKPVLLAPI 514
+ +V++ QP + A ++ +P+ +P+
Sbjct: 198 QHPQ--QVLSAPGQPTAVNSSNAPCIAPIRRPICKSPL 233
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 206 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKC 358
G P G T VY+V AH+ GVIV+ + I ++ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 341 VKHSKCRQDFLKRVKENERLLKEAKA 418
++ +KCRQD++ VK++ +L+++ A
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA 26
>09_02_0549 + 10485415-10486107
Length = 230
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
T R NV +IV V+GRI+P I ++H + K+ +EN L+ +
Sbjct: 96 TNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 149
Query: 416 AAGKVVNLKRQP-APPKAAHIVSGAEKPVLLAPI 514
+ + RQ + P +VS + P +API
Sbjct: 150 GSTLLRQHPRQVLSAPGRPTVVSSSNAP-RIAPI 182
>08_01_0293 - 2367453-2368088
Length = 211
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 238 RACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQG 387
+ CL+ + R+RR + R R+D T AR AL A A++G
Sbjct: 56 KLCLRTLQPRARRGGGEHRRRRDDAVTRYVGAAARGALDAYAATAAAKRG 105
>06_01_1185 + 10183666-10184469
Length = 267
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +2
Query: 242 RVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAA 421
R NV +IV VRGRI+P I ++H + K+ KEN L+ + +
Sbjct: 98 RHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCKENNSSLQLQRGS 151
Query: 422 GKVVNLKRQ-PAPPKAAHIVSGAEKPVLLAPI 514
+ +Q + P + +VS + P +API
Sbjct: 152 MLLHQHPQQVSSAPGRSTVVSSSNAP-RIAPI 182
>06_01_1088 -
8926361-8927301,8927437-8927705,8927850-8929023,
8929132-8929399
Length = 883
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +2
Query: 269 LGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 430
LGV + + R KR + K + CR LK L EAK G V
Sbjct: 151 LGVPLTRGAAARAKEKRAAATVTGTKSASCRTKKLKGESSRAPRLDEAKCIGNV 204
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 110 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 274
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>04_03_0151 + 11905926-11906618
Length = 230
Score = 27.1 bits (57), Expect = 9.1
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 415
T R NV +IV V+GRI+P I ++H + K+ +EN L+ +
Sbjct: 96 TNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 149
Query: 416 AAGKVVNLKRQ-PAPPKAAHIVSGAEKPVLLAPI 514
+ + RQ + P +VS + P +API
Sbjct: 150 GSTLLRQHPRQASSAPGHPAVVSSSNAP-RIAPI 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,862
Number of Sequences: 37544
Number of extensions: 343501
Number of successful extensions: 1151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -