Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A16
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 150 6e-37
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 32 0.25
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 31 0.58
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 31 0.76
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.76
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 31 0.76
SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6) 31 0.76
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 30 1.3
SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5) 29 1.8
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 29 2.3
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 29 2.3
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 29 2.3
SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29) 29 2.3
SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_30646| Best HMM Match : CHASE3 (HMM E-Value=2.7) 29 2.3
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 29 3.1
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25) 29 3.1
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 28 4.1
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012) 28 5.4
SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21) 28 5.4
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 28 5.4
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 28 5.4
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 27 7.1
SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_42806| Best HMM Match : MORN (HMM E-Value=0) 27 7.1
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37908| Best HMM Match : Retrotrans_gag (HMM E-Value=0.067) 27 9.4
SB_32124| Best HMM Match : K-box (HMM E-Value=4.1) 27 9.4
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 27 9.4
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 27 9.4
SB_34874| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_32265| Best HMM Match : Bim_N (HMM E-Value=1.5) 27 9.4
SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_17780| Best HMM Match : TT_ORF2 (HMM E-Value=2.6) 27 9.4
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 27 9.4
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) 27 9.4
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 150 bits (364), Expect = 6e-37
Identities = 67/90 (74%), Positives = 79/90 (87%)
Frame = +2
Query: 56 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 236 TGRVYNVTAHALGVIVNKRVRGRILPKRIN 325
TGRVYNVT ALGV+VNK+V+G+IL KRIN
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKGKILAKRIN 512
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 265 RSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERK 396
R RR RE RQD +HP RAR A + G R E +
Sbjct: 305 RGRRRRENKTRRQDRDSHGRHPGRARNAWDISTGSNVVRGAEHQ 348
>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 32.3 bits (70), Expect = 0.25
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +2
Query: 176 DIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSK 355
DI G G+ GMP + G+V ++ A GV++ R ++ I H HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSK 159
Query: 356 CRQDFLKRVKENERLLKEAKAAG 424
F+ R+K E K G
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRG 181
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 256 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQA 363
+RTR RDR+ R R D E + RAR+ V+A
Sbjct: 218 ERTRDHRDRDFERSRHDRRERDREVERARDQKDVRA 253
>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/81 (28%), Positives = 34/81 (41%)
Frame = +2
Query: 5 SPGAAGIRHEALKQG*NMTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIR 184
SPG GI E K G SK ++ + AR G +P+ + VGDI I
Sbjct: 339 SPGKCGIPAEIWKHGGTEIVSKLHKLVLKVWSARTHLMTGEMPVLSLFSRKVVGDITTID 398
Query: 185 GNGAVQKGMPHKVYHGKTGRV 247
+ K ++ HGK ++
Sbjct: 399 ITLTITKPKKNEYEHGKRKKI 419
>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
Length = 432
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 466 SLWRCRLSLQVNYFAGGFSFLQQP--FVLLDALEEVLP 359
S+W L V YFAGG F+ QP F+ LE LP
Sbjct: 88 SVWMLASVLSVPYFAGGDKFIFQPAEFLCFFTLERPLP 125
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 368 FLKRVKENERLLKEAKAAGKVVNLKRQPA-PPKAAHIVSGAEKPVLLAPIP 517
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
Length = 269
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 466 SLWRCRLSLQVNYFAGGFSFLQQP--FVLLDALEEVLP 359
S+W L V YFAGG F+ QP F+ LE LP
Sbjct: 88 SVWMLASVLSVPYFAGGDKFIFQPAEFLCFFTLERPLP 125
>SB_26305| Best HMM Match : Integrase_Zn (HMM E-Value=9.6)
Length = 222
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 250 QCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLP-QARQGERK 396
Q ++ S RD++ ARPRQ +T + ++ QA P Q RQ RK
Sbjct: 74 QVNQAASPRDKQCARPRQPSRKTKASKPQDQDKRDKQAARPRQERQASRK 123
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 259 RTRSRRDREQARPRQDPTETHQHPH 333
RTR R R + P DPT T PH
Sbjct: 124 RTRHRPTRRRHEPHTDPTRTRHEPH 148
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 256 DRTRSRRD--REQARPRQDPTETHQHPH 333
D TR+ D + Q RP DPT+T PH
Sbjct: 150 DTTRTHTDPTQTQHRPNTDPTQTQHRPH 177
>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
Length = 547
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 274 RDREQARPRQDPTETHQHPHRAREALQVQAGLPQA-RQGERK 396
+D++ ARPRQ +T + + ++A + PQA RQ RK
Sbjct: 201 QDKQAARPRQASRKTSKSQDQDKQAASPKTSKPQAPRQASRK 242
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 INIRIEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKVVNLKRQPAPPKAAH-IVSGAEK 493
IN+ I +SK QD+LK + K NER + ++ +KR+ A + +VS K
Sbjct: 109 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 167
Query: 494 PVL 502
PVL
Sbjct: 168 PVL 170
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 INIRIEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKVVNLKRQPAPPKAAH-IVSGAEK 493
IN+ I +SK QD+LK + K NER + ++ +KR+ A + +VS K
Sbjct: 28 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 86
Query: 494 PVL 502
PVL
Sbjct: 87 PVL 89
>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 1353
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 256 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGER 393
D+ + ++ QARPRQ ++ P +A + Q +QG R
Sbjct: 185 DKPQGKQAARQARPRQASRKSKARPRQASRKSKASKSKDQGKQGAR 230
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 250 QCDRTRSRRDRE-QARPRQDPTETHQHPHRAREALQVQAGLPQARQGER 393
Q + + ++D+E QARPRQ ++ P +A + Q +QG R
Sbjct: 400 QDKQEQDKQDQEKQARPRQASRKSKARPTQASRKSKASKSKDQGKQGAR 448
>SB_29251| Best HMM Match : rve (HMM E-Value=2.3e-29)
Length = 324
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 INIRIEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKVVNLKRQPAPPKAAH-IVSGAEK 493
IN+ I +SK QD+LK + K NER + ++ +KR+ A + +VS K
Sbjct: 28 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 86
Query: 494 PVL 502
PVL
Sbjct: 87 PVL 89
>SB_59388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 INIRIEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKVVNLKRQPAPPKAAH-IVSGAEK 493
IN+ I +SK QD+LK + K NER + ++ +KR+ A + +VS K
Sbjct: 74 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 132
Query: 494 PVL 502
PVL
Sbjct: 133 PVL 135
>SB_30646| Best HMM Match : CHASE3 (HMM E-Value=2.7)
Length = 130
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 320 INIRIEHVKHSKCRQDFLK-RVKENERLLKEAKAAGKVVNLKRQPAPPKAAH-IVSGAEK 493
IN+ I +SK QD+LK + K NER + ++ +KR+ A + +VS K
Sbjct: 39 INVFITDEFYSKA-QDYLKEKAKGNERRISNQMTKTEIEAIKRKKWTLNAKNEVVSSGGK 97
Query: 494 PVL 502
PVL
Sbjct: 98 PVL 100
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 200 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEH 340
++G PH+ + G TGR A+ + +K + ++L +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 283 HDHAESVCGHIVNTPCLTVVYFVWHTLLYSAIAPNVNDVSHFVH 152
H ++ GHIVNT + ++Y V T + I + H V+
Sbjct: 477 HIVTTTIIGHIVNTTTIIIIYIVNTTTIIIHIVNTTTIIVHIVN 520
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 256 HIVNTPCLTVVYFVWHTLLYSAIAPNVNDVSHFVH 152
HIVNT + ++Y V T + S I H VH
Sbjct: 517 HIVNTTTIIIIYIVNTTTIISHIVNTTTHHHHIVH 551
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 277
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 482 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 541
Query: 278 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
V + R R R+ IEH S CR KR K +R
Sbjct: 542 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 581
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 277
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 719 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 778
Query: 278 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
V + R R R+ IEH S CR KR K +R
Sbjct: 779 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 818
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 277
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1270 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 1329
Query: 278 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
V + R R R+ IEH S CR KR K +R
Sbjct: 1330 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1369
>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
Length = 440
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 277
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 166 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 225
Query: 278 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
V + R R R+ IEH S CR KR K +R
Sbjct: 226 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 265
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 277
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1054 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 1113
Query: 278 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
V + R R R+ IEH S CR KR K +R
Sbjct: 1114 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1153
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 428 VVNLKRQPAPPKAAHIVSGAEKPVLLAPIPY 520
+VN + PP A + ++ ++PVL P+P+
Sbjct: 129 LVNKSKAETPPPAYYTITSNQEPVLNMPVPW 159
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 251 CKHALSYRGILCVAYPFVQRHCP*CQRCLPLCTLSC 144
C H+ + G C Y R CP + C CT C
Sbjct: 823 CDHSHYFNGAECAPYKISHRPCP--EACAKRCTDDC 856
>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
Length = 1153
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 63 TPRVIVVVPGTCSPEDSAHMELFHFP 140
TP + G C+ DS + E+FHFP
Sbjct: 328 TPGSSPQINGFCTSTDSQYAEIFHFP 353
>SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
Length = 217
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 104 GRTSPWYHDDNPWSLSYFSLV 42
G PW D PW L+YF+ V
Sbjct: 165 GCIEPWPKSDFPWHLAYFAFV 185
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 314 KRINIRIEH-VKHSKCRQDFLKRVKENERLLKEAKA 418
+RI I+H ++ K +QDF+ +KE RL +E+++
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRS 74
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 475 NMRSLWRCRLSLQVNYFAGGFSFLQQPFVLLDALEEVLPA--LGVLHVLDAD 326
N+R LW CR SL S L + ++ + + +V P L L VLD +
Sbjct: 757 NLRMLWMCRCSLSDLDGISSLSSLAELYLAFNDISDVSPVSMLDNLQVLDLE 808
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H ++A Q+ + + +Q R
Sbjct: 292 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHANQAEPIAQISSLQGETKQDTR 342
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H ++A Q+ + + +Q R
Sbjct: 510 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHANQAEPIAQISSLHGETKQDTR 560
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H ++A Q+ + + +Q R
Sbjct: 292 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHANQAEPIAQISSLHGETKQDTR 342
>SB_52277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 296 RGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPK 463
R R+ KR+ +RI+H+ F KR++ N L+ +V+ +P P K
Sbjct: 99 RLRVRTKRVQVRIDHL------GIFTKRLRVNTERLRSRTEPQRVITSAYEPVPNK 148
>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
Length = 778
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/92 (26%), Positives = 39/92 (42%)
Frame = +2
Query: 218 KVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENER 397
K Y KT +Y + A+A + + G P R ++R +H + +K E
Sbjct: 532 KKYIPKTWDIY-MDANAPSRSMEESQEGTDSPIR-SVRSQHGARESPDKPLDSPIKSREG 589
Query: 398 LLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEK 493
KEA AGKV + Q + +VS ++
Sbjct: 590 PNKEASLAGKVPEVSPQEGARRTVSLVSAGKE 621
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H ++A Q+ + + +Q R
Sbjct: 270 CIDCHRVNRRARRPQRQPQQRSPQAPTVHANQAEPIAQISSLHGETKQDTR 320
>SB_37908| Best HMM Match : Retrotrans_gag (HMM E-Value=0.067)
Length = 449
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H +A Q+ + + +Q R
Sbjct: 292 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHATQAEPIAQISSPHGETKQDTR 342
>SB_32124| Best HMM Match : K-box (HMM E-Value=4.1)
Length = 207
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 323 NIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 430
N R+++ ++ K R++ RV +NE LLK+ K KV
Sbjct: 32 NDRLDN-ENQKLRKELADRVDQNEILLKQVKELEKV 66
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 275 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRV---KENERLLKEAKAAGKVVNLKR 445
+I R R KR+ ++K D R+ KENE K ++A +++NL+
Sbjct: 1538 IIEKSNDRDRENAKRMEEENINLKRRVAEMDINNRINSEKENELQSKLSQAHEQIINLEN 1597
Query: 446 QPAPPKAAHIVS 481
+P A +VS
Sbjct: 1598 RPQLESAISMVS 1609
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 265 RSRRDREQARPRQDPTETHQHPHRAREALQ 354
RSRR+ + A+PR +PT + PH++ + Q
Sbjct: 98 RSRRETQLAQPR-NPTSPAEKPHQSSKETQ 126
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 265 RSRRDREQARPRQDPTETHQHPHR-AREALQVQAGLP 372
RSRR+ + A+PR +PT + PH+ +RE VQ P
Sbjct: 201 RSRRETQLAQPR-NPTGPAEKPHQYSRETPPVQPRNP 236
>SB_34874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 250 QCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQ 384
+C+R +S E + +Q+ T+ HQ A A+++Q L A +
Sbjct: 121 KCERAKSLPIEESVQLQQEQTKHHQELVAAHAAIRLQEQLKNAEK 165
>SB_32265| Best HMM Match : Bim_N (HMM E-Value=1.5)
Length = 235
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGER 393
C+ C R R R Q +P+Q P H ++A Q+ + + +Q R
Sbjct: 49 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHVNQAEPIAQISSLHGETKQDTR 99
>SB_29927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 244 CLQCDRTRSRRDREQARPRQ-DPTETHQHPHRAREALQVQAGLPQARQGERK 396
C+ C R R R Q +P+Q P H +A + + Q +G R+
Sbjct: 117 CIDCHRVNRRSRRPQRQPQQRSPQAPTVHATQAEPIAHISSLHGQTSEGNRR 168
>SB_17780| Best HMM Match : TT_ORF2 (HMM E-Value=2.6)
Length = 310
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 205 LLYSAIAPNVNDVSHFVHFHVRGKWNSS 122
L Y +I V FVHFH+ W ++
Sbjct: 283 LRYQSIPEEVKAFERFVHFHIAEPWQAT 310
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 323 NIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKV 430
N R+++ ++ K R++ RV +NE LLK+ K KV
Sbjct: 769 NDRLDN-ENQKLRKELADRVDQNEILLKQVKELEKV 803
>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
Length = 1019
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 265 RSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVEG 408
R+R + R PTE+ HP+ +R L ++G Q++ E++ G
Sbjct: 789 RNRYSESRNDSRYIPTESRSHPNESRGHLS-ESGSVQSKDKEKEVSTG 835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,870
Number of Sequences: 59808
Number of extensions: 387931
Number of successful extensions: 1561
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -