Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A16
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.15 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 238  RACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQG 387
            R      + + ++ ++Q + +Q   +  Q  H+ARE   V AG+ +   G
Sbjct: 1203 RNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAG 1252



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +1

Query: 274  RDREQARPRQDPTETHQHPHR-----AREALQVQAGLPQARQGERKAVEG 408
            + ++Q + +Q P +  Q P +      ++  Q Q   PQ +Q E  AV G
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSG 1555



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 286 QARPRQDPTETHQHPHRAREALQVQ 360
           QA+P+Q   +  Q P + ++  Q Q
Sbjct: 827 QAQPQQQQQQQQQQPQQQQQQQQQQ 851


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 193 AIAPNVNDVSHFVHFHVRGKWNSSMCAESSGEQVPGTT 80
           +++P V + S  VH       NSS  +E S E+   T+
Sbjct: 734 SLSPRVENRSAIVHSEASANANSSTSSEESREEKATTS 771


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 287 KRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQ 448
           KRV   +   R +  I H +HSK  Q   +  +  ER  ++ + + +V + ++Q
Sbjct: 39  KRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQ 92


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 259 GHIVNTPCLTVVYFVWHTLLYSAI 188
           G+++   CLTVV   + + + S I
Sbjct: 380 GYLLGIQCLTVVCLAFWSFIVSTI 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,564
Number of Sequences: 438
Number of extensions: 3497
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)