Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A15
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 31 0.031
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.054
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 27 0.89
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch... 27 0.89
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 2.0
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 3.6
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 3.6
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 3.6
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 3.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 3.6
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 24 4.7
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 24 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 23 8.3
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 23 8.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 23 8.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 8.3
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 31.5 bits (68), Expect = 0.031
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 65 VSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTIGGVATT 217
V + + +E+D + L+ + G+ V G V+N WC G+ TT
Sbjct: 161 VHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTT 211
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.054
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = -3
Query: 309 TAT*VPRGLVHTSTSPIT---ALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTE--VPA 145
T+T + V S++PIT AL+ + ++ ++ PI ++ P+T V
Sbjct: 512 TSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLN 571
Query: 144 SSAESLKPLMINGITTSRSFSVIFVETPSNINILSHSVTPMAYKS 10
SS ++N T +SV+ TP + + +S TP+ S
Sbjct: 572 SSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITSSS 616
Score = 30.3 bits (65), Expect = 0.072
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = -3
Query: 309 TAT*VPRGLVHTSTSPIT---ALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTE--VPA 145
T+T + V S++PIT AL+ + ++ ++ PI ++ P+T V
Sbjct: 716 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLN 775
Query: 144 SSAESLKPLMINGITTSRSFSVIFVETPSNINILSHSVTPMAYKS 10
SS ++N T S SV+ TP + + +S TP+ S
Sbjct: 776 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSS 820
Score = 27.9 bits (59), Expect = 0.38
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Frame = -3
Query: 309 TAT*VPRGLVHTSTSPITA---LSGTMYSLGWQIVVATPPIVHHGLITVCPPVTE--VPA 145
++T + + S++PIT+ L+ + +V + PI ++ P+T V
Sbjct: 752 SSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLN 811
Query: 144 SSAESLKPLMINGITTSRSFSVIFVETPSNINILSHSVTPMAYKS 10
SS ++N T S +V+ TP + + +S TP+ S
Sbjct: 812 SSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSS 856
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 0.89
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 141 SAESLKPLMINGITTSRSFSVIFVE 67
SAESLK L+ +GI T FS + E
Sbjct: 352 SAESLKDLLEDGIVTKDRFSQVVTE 376
>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 0.89
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 276 TSTSPI-TALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTEVPASSAESLKPLMINGIT 100
T+T+P+ +A ++YS + PP+ H ++ VT S K + ++
Sbjct: 96 TTTTPVASATDVSVYSASIHVPTGNPPVDTHNPLSYDTEVTATTTFSIALPKFNKGDRVS 155
Query: 99 TSRSFSVIFV 70
++ ++SV FV
Sbjct: 156 SANTYSVSFV 165
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 2.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 41 DNMLMLLGVSTKMTEKERDVVIP 109
D ML ++ STK+ +K D++IP
Sbjct: 312 DRMLEIIPSSTKVLDKASDILIP 334
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 3.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 11 DLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTG 166
D+Y +G TEC + G S T K+ ++ L AL+ S G
Sbjct: 168 DVYELGYTECSKSYVFRG-SKDYTSKQIQEMLGLPTSNVSPVALQQARSFQG 218
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 11 DLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSAL 142
D+Y + C N L LL ++ K + E ++ F S+L
Sbjct: 584 DIYNSDIRSCINSLQLLSLNNKRIDSETIKLLQPKSNSFSTSSL 627
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 113 IMRGFKDSALEAGTSVTGGQTVIN 184
++RG K SAL + S+T QT +N
Sbjct: 225 LIRGCKPSALFSDASLTNSQTELN 248
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 2 HEGDLYAMGVTECDNMLMLLGVSTKMTEKERD 97
H + +GV DN + L +S ++ E+E+D
Sbjct: 396 HPNEDSVIGVVGADNQISLWDLSVELDEEEQD 427
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 3.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 298 STEGLSSHKYITHNSIVWNYVFIGLADCRGNPPDSTPWVDYSLSP 164
S E +S+H + +N +W+Y GL P T + +LSP
Sbjct: 402 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 446
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -3
Query: 123 PLMINGI--TTSR-SFSVIFVETPSNINI 46
PL I+G T SR + S++F E PSN NI
Sbjct: 38 PLTIHGKFNTYSRGNISIVFGEAPSNSNI 66
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 23.8 bits (49), Expect = 6.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 122 GFKDSALEAGTSVTGGQTVINPW-CTIGGVATTICQPN 232
G+K S L +VT V W IGG AT C P+
Sbjct: 238 GYKGSYL----TVTNRDAVFVGWNIVIGGFATVFCDPS 271
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 165 PVTEVPASSAESLKPLMINGITTSRSFSVIFVETPSNINILSHSVTP 25
P T +P S++ + I +S S T ++ L+HS+TP
Sbjct: 540 PSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITP 586
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 8.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -3
Query: 108 GITTSRSFSVIFVETP 61
G+T +R+F +F++TP
Sbjct: 208 GMTVARAFQSLFIQTP 223
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 275 QVHHP*QHCLELCIHWVGRLSW 210
++ P Q E C +VGRLSW
Sbjct: 251 KITKPSQDSNETCTVFVGRLSW 272
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Frame = -3
Query: 204 PPIVHHGLITVCPPVTE------VPASSAESLKPL 118
PP H TV PP T VP ++ S+ P+
Sbjct: 135 PPTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPI 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,303
Number of Sequences: 5004
Number of extensions: 30319
Number of successful extensions: 81
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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