Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A15
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0862 + 6533161-6533361,6533919-6534155 28 1.3
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 1.3
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 1.8
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 3.1
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 27 3.1
05_04_0296 - 19943253-19944159,19944239-19945031,19945434-199454... 27 4.1
04_04_1251 + 32083164-32083284,32083448-32083614,32083719-320837... 27 4.1
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644... 27 4.1
08_02_0636 + 19567654-19568859 26 5.4
07_01_0240 - 1749674-1750514,1751157-1752040 26 5.4
04_03_0935 + 20918617-20919299,20919328-20919627,20919680-209198... 26 5.4
03_05_0092 - 20714102-20717902 26 5.4
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 26 7.1
04_04_1303 - 32487174-32487871,32488583-32489123 26 7.1
10_08_0989 + 22069244-22071679 25 9.4
10_01_0106 + 1317848-1318202,1318208-1318872,1318969-1319850,131... 25 9.4
09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293... 25 9.4
05_04_0089 - 17821196-17821306,17821611-17821688,17821801-178218... 25 9.4
01_06_0533 + 30052538-30054004 25 9.4
>06_01_0862 + 6533161-6533361,6533919-6534155
Length = 145
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 131 DSALEAGTSVTGGQTVINPWCTIGGVATTI-CQPNEYIVPDNAVMG 265
DS + + + G + V+ PW GG ATTI P E+++ + G
Sbjct: 39 DSISFSYSGIDGQEHVVGPWGGNGGHATTIMLGPTEHVIEVSGTHG 84
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 297 VPRGLVHTSTSPITALSGTMYSLGWQIVVATPPIVHH 187
+PR H S+ P +A S + S + VA PP HH
Sbjct: 20 LPRHRTHCSSGPASAPSTSTTSSSAPLPVAAPPPPHH 56
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 1.8
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = -3
Query: 297 VPRGLVHTSTSPITALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTEV--PASSAESLK 124
VP L H+ TSPI + + +YS I T + + V P + V P SSA S
Sbjct: 1635 VPTSLPHSPTSPIYSATSPIYSPSSPIYSPT-SLSYSPTSPVYSPTSPVYNPTSSAYSPT 1693
Query: 123 PLMINGITTSRSFSVIFVETPSNINILSHSVTPMAYKSPS 4
N + S S+S S+S T +Y S
Sbjct: 1694 SPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTS 1733
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 214 RGNPPDSTPWVDYSLSPCYRSTSF*RRIFETP 119
R P DS+ W ++SLSP + TS R E P
Sbjct: 164 RACPRDSSKWGNHSLSPDHAPTSCLRTEGEVP 195
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 146 AGTSVTGGQTVINPWCTIGGVATTICQPNEYIVPDNAVMGDVLV*TKPLGTQVA 307
A + TG +V++ C+ A T E +P NA + + ++ T P GT VA
Sbjct: 704 AKVATTGNSSVVHKECSS---AITRKGTKEVTMPTNAFLSNQILSTSPRGTVVA 754
>05_04_0296 -
19943253-19944159,19944239-19945031,19945434-19945496,
19947086-19947182
Length = 619
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 86 KERDVVIPLIMRGFKDSALEAGTSVTG 166
K+R V+P R ++D L+AG S TG
Sbjct: 283 KKRKAVMPEPSRLYEDKVLDAGISTTG 309
>04_04_1251 +
32083164-32083284,32083448-32083614,32083719-32083721,
32084323-32084532,32084818-32084977,32085080-32085314,
32085405-32085555
Length = 348
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 183 LITVCPPVTEVPASSAESLKP 121
L+TVCP VT PA +AE+ KP
Sbjct: 191 LVTVCPVVTVGPAPAAEA-KP 210
>04_01_0490 -
6440176-6440448,6440785-6441074,6441156-6441304,
6441432-6441890,6441973-6442269,6442604-6443502,
6443793-6443827,6443984-6444078,6444184-6444247,
6446099-6446175,6446330-6446514
Length = 940
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 8 GDLYAMGVTECDNM-LMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAG 151
G++ V + +N L GV + ++E+++++ PL+ FKD L G
Sbjct: 314 GEIEKEKVRQQENKNLTFTGVLSMVSEQQKEITRPLLKVEFKDLTLSLG 362
>08_02_0636 + 19567654-19568859
Length = 401
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 189 HGLITVCPPVTEVPASSAESLKPLMINGITTSRSFSVIFVETPSN 55
H + ++ P + VPA+ +SL + G T+S +F E PSN
Sbjct: 34 HAMGSLSP--SSVPATPVDSLVSVSSPGATSSVDSQKVFDEMPSN 76
>07_01_0240 - 1749674-1750514,1751157-1752040
Length = 574
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 77 MTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTV 178
M EKE+DVV+P +M D V G TV
Sbjct: 188 MKEKEKDVVLPSVMHVTGDDVPPPPLLVMGEDTV 221
>04_03_0935 +
20918617-20919299,20919328-20919627,20919680-20919836,
20921338-20921397,20921554-20921670
Length = 438
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 161 TGGQTVINPWCTIGGVATTIC 223
+GG I WCT+GG C
Sbjct: 234 SGGSAAIPSWCTMGGGGGKFC 254
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 213 VATPPIVHHGLITVCPPVTEVPASS-AESLKPLMINGITTSRSFSVIFVETPSNINILSH 37
++T P++ I CP + +PAS SLK L I+ + R + P N+NI
Sbjct: 1193 ISTLPVLEELCIENCPALEALPASGLPTSLKRLSISK-CSPRLTQRCLDDEPDNLNIAKI 1251
Query: 36 SV 31
+V
Sbjct: 1252 AV 1253
>08_02_0678 -
19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 129 LKPLMINGITTSRSFSVIFVETPSNINILSHS 34
LKPL ING + S + V+ + +N++ ++
Sbjct: 147 LKPLYINGYVNGKPMSKMMVDGGAAVNLMPYA 178
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 289 GLSSHKYITHNSIVWNYV--FIGLADCRGNPPDSTPWVDYSL 170
G++ H + W +V + CRG P +TP D S+
Sbjct: 125 GVTLHHGVADGKSFWTFVEAWASACRCRGEAPAATPCFDRSV 166
>10_08_0989 + 22069244-22071679
Length = 811
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 32 TECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTIGG 205
T+ ++L ++G S K + RDV IM + +E+G + + P T G
Sbjct: 426 TQVSHLLNIVGTSCKRHDMLRDVRAQKIMEALELGEIESGVGLNQEMGLARPGDTRWG 483
>10_01_0106 +
1317848-1318202,1318208-1318872,1318969-1319850,
1319856-1320200,1320286-1320294
Length = 751
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 136 GARSWYFCNRGTDCNQPMVYYRGGCHD-NLPTQ 231
G + Y G NQP YY+GG ++ N P Q
Sbjct: 282 GNNNGYCPQGGQGWNQPRPYYQGGNNNSNFPNQ 314
>09_06_0078 +
20727684-20728036,20728871-20728895,20729218-20729347,
20729441-20729571,20729654-20729742,20730127-20730203,
20730279-20730412
Length = 312
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 119 RGFKDSALEAGTSVTGGQTVINPWCTIGGVATTICQPN 232
R F + + + GG T NP T GG++T I +PN
Sbjct: 45 RTFANESSDNDPVRVGGPT--NPLLTDGGLSTVIAKPN 80
>05_04_0089 -
17821196-17821306,17821611-17821688,17821801-17821863,
17822167-17823021,17823121-17823236,17823930-17824004,
17826156-17826213
Length = 451
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 177 TVCPPVTEVPASSAES 130
T+ PP EVPA SAES
Sbjct: 236 TILPPSEEVPAISAES 251
>01_06_0533 + 30052538-30054004
Length = 488
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 225 WQIVVATPPIVHHGLITVCPPVTEVP 148
W++ ++ + HG T CP E+P
Sbjct: 403 WRLAESSKIFLCHGFYTACPAKQEIP 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,699,035
Number of Sequences: 37544
Number of extensions: 204401
Number of successful extensions: 619
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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