Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A15
(314 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 2e-38
SB_7958| Best HMM Match : NCD3G (HMM E-Value=2.9) 30 0.45
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.60
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 28 1.8
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33) 27 3.2
SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14) 26 5.6
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 26 5.6
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06) 26 5.6
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 26 5.6
SB_965| Best HMM Match : IgG_binding_B (HMM E-Value=8.5) 26 7.4
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 25 9.8
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 25 9.8
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 154 bits (373), Expect = 2e-38
Identities = 72/101 (71%), Positives = 85/101 (84%)
Frame = +2
Query: 11 DLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPW 190
DLYAMGVTECDNMLMLLGVS +MT KER+VV PL++ GF D ALEAGT+V GGQTV+NPW
Sbjct: 357 DLYAMGVTECDNMLMLLGVSNQMTLKEREVVTPLVISGFNDLALEAGTTVNGGQTVLNPW 416
Query: 191 CTIGGVATTICQPNEYIVPDNAVMGDVLV*TKPLGTQVAVN 313
IGGVA+++ E I+P+NA +GDVLV TKPLGTQ+AVN
Sbjct: 417 FIIGGVASSVVAKGEAIMPENAEVGDVLVLTKPLGTQIAVN 457
>SB_7958| Best HMM Match : NCD3G (HMM E-Value=2.9)
Length = 257
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 204 PPIVHHGLITVCPPVTEVPASSAESLKPLMIN 109
P ++ H P V+EVPAS+ S PL+++
Sbjct: 216 PTLLAHRAFATAPSVSEVPASTVPSSSPLVLS 247
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.5 bits (63), Expect = 0.60
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = -3
Query: 267 SPITALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTEVPASSAESLKPLMINGITTSRS 88
+P+T + T SL I +T P V+H V ++ P+S S P + + T+ S
Sbjct: 1907 TPVTDMCSTTSSLASTISFSTAPTVNH----VSNRPSDCPSSELLSSPPNISTLVITAPS 1962
Query: 87 FSVIFVETPSNINILSHSVTPMAYKS 10
+ V P L H +TP +++
Sbjct: 1963 V-ITSVALPEEKQSLVHDLTPSEHQT 1987
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 264 PITALSGTMYSLGWQIVVATPPIVHHGLITV-CPPVTEVPASS 139
PIT +S T+ + + TP + H T+ P VT+ PAS+
Sbjct: 1180 PITTMSTTVVTQHPASTITTPAVTQHPASTITTPAVTQHPAST 1222
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 219 IVVATPPIVHHGLITVCPPVTEVPASSAESLKP 121
+V TP + +G I+V PVT+ S ESL P
Sbjct: 68 VVHVTPTHIDYGTISVLSPVTKTVRLSNESLIP 100
>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
Length = 725
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -3
Query: 273 STSPITALSGTMYSLG-----WQIVVATPPIVHHGLITVCPPVTEVPASSAESLKPLMIN 109
+ +PIT +GT+Y G ++ T I +GLI + + PA+ + S +++
Sbjct: 131 TNAPITEKNGTLYFSGSGQDAMARIIMTDLIAGNGLIHILDTAMKYPANFSSSSDMSVLD 190
Query: 108 GITTSRSFSVI 76
I +S S +
Sbjct: 191 VIQSSNELSTL 201
>SB_55856| Best HMM Match : TPR_2 (HMM E-Value=4.1e-14)
Length = 742
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 167 GQTVINPWCTIGGVATTICQPNEYIVPDNAVMGDVL 274
GQ V P C + G C+ + +VPD V G VL
Sbjct: 292 GQVV--PDCRVSGQVVPDCRVSGQVVPDCRVCGQVL 325
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 177 TVCPPVTEVPASSAESLKPLMINGITTSR 91
TV P TE P ++ P+ I ITT+R
Sbjct: 232 TVAPTTTETPKTTKAPKTPITIPKITTNR 260
>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
Length = 472
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 115 HEGFQRFGARSWYFCNRGTDCNQPMVYYRGGCHDNLPTQ*IH 240
H G +FG + + N +P VYY G ++ PT IH
Sbjct: 167 HFGDFKFGIKKITYGNPVIQSMKPEVYYSGTVRNDDPTPLIH 208
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Frame = +1
Query: 151 YFCNRGTDCNQPMVYYRGGCHDNLPTQ*IHSS-RQC-----CYG*CTCVN*APRYSGSC 309
+ C G C + YR C D L + + +C C TCVN YS +C
Sbjct: 728 HLCKNGATCTSKLGKYRCSCPDGLTGRHCETDLNECKPSNPCRNDGTCVNTYGSYSCAC 786
>SB_965| Best HMM Match : IgG_binding_B (HMM E-Value=8.5)
Length = 174
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +1
Query: 103 NSVDHEGFQRFGARSWYFCNRGTDCNQPMVYYRGGCHDN 219
NS DH+ G W F NR + N G N
Sbjct: 18 NSYDHDYEFELGTLPWLFLNRASTANSERTAIASGPRSN 56
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -2
Query: 226 LADCRGNPPDSTPWVDYSLSPCYRSTSF*RRIFETPHDQRNYNIAFFFSHLCRNSE 59
L D P D W YS + R IF T H+ + + A+ F H+ + E
Sbjct: 963 LPDLPSQPSDQRQWPQYSNT---------RNIFSTTHEFKQFAEAWGFQHVTSSPE 1009
>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
Length = 390
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 100 CNSVDH-EGFQRFGARSWYFCNRGTDCNQPMVYYRGG 207
C S+ H G++ FG ++ C G D N Y R G
Sbjct: 142 CASLAHARGYKLFGVHNYGECRAGAD-NADQTYARNG 177
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 119 RGFKDSALEAGTSVTG--GQTVINPWCTIGGVATTICQPNEYIVPDN 253
RGF +A+ A V +++P C + +T+C PN VP N
Sbjct: 287 RGFDIAAVVAMVLVLSFDDAQIVSPPCHLDD-KSTVCSPNAVCVPSN 332
>SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 219 IVVATPPIVHHGLITVCPPVTEVPASSAESLKPLMINGI 103
++ ++PP+ ++G I+ PVT + S A +P + I
Sbjct: 119 LLASSPPVKNNGGISTSIPVTMISQSQAVIYEPHALRAI 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,620
Number of Sequences: 59808
Number of extensions: 228378
Number of successful extensions: 611
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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