Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A15
(314 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical ... 136 2e-33
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 30 0.40
AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical... 29 0.93
Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical p... 27 2.1
U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein. 27 2.1
AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin... 27 2.1
AF040644-3|AAP82651.1| 336|Caenorhabditis elegans Gamma-tubulin... 27 2.1
AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin... 27 2.1
AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin... 27 2.1
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 27 2.8
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 27 2.8
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 27 2.8
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 27 2.8
Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z81545-9|CAB04445.1| 173|Caenorhabditis elegans Hypothetical pr... 26 5.0
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 26 5.0
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 26 5.0
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 26 5.0
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 26 5.0
Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81119-3|CAB03334.1| 550|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 25 8.7
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 25 8.7
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 25 8.7
>AL021488-2|CAA16367.2| 378|Caenorhabditis elegans Hypothetical
protein Y45F10A.4 protein.
Length = 378
Score = 136 bits (330), Expect = 2e-33
Identities = 63/101 (62%), Positives = 79/101 (78%)
Frame = +2
Query: 11 DLYAMGVTECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPW 190
DLYAMGV+ECDNMLMLL V+ + EK+RD+V+PL ++GFKD+A EAGT + GGQTV PW
Sbjct: 106 DLYAMGVSECDNMLMLLAVAIDLNEKQRDIVVPLFIQGFKDAADEAGTKIRGGQTVRCPW 165
Query: 191 CTIGGVATTICQPNEYIVPDNAVMGDVLV*TKPLGTQVAVN 313
+GGVAT++ +E I D AV GDVL+ TKP+G QVAVN
Sbjct: 166 LLLGGVATSVAHESEIIKVDQAVPGDVLILTKPIGGQVAVN 206
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 154 FCNRGTD--CNQPMVYYRGGCHDNLPTQ*IHSSRQCCYG*CTCVN 282
+C G++ CN VYY C++ +P Q C G C+N
Sbjct: 554 YCQGGSNGQCNSNQVYYNNQCYNTVPIGSQCQITQQCLGNSQCMN 598
>AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical
protein C15F1.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 271 YITHNSIVWNYVFIGLAD-CRGNPPDSTPWVDYSLSPCYRSTSF*RR 134
Y HN+ ++ Y+F AD CR + W+ + + C ST + +R
Sbjct: 130 YTKHNNTLFTYIFFSAADTCRDFDNNCRDWITVNPNAC-DSTEYIKR 175
>Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical
protein D2013.10 protein.
Length = 246
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -3
Query: 231 LGWQIVVATPPIVHHGLITVCPPVTEVPASSAESLKPLMINGITTSRSFSVIFVETPSNI 52
L + I + PIV + LI + PV +VP L P S ++++ S +
Sbjct: 155 LNYMIFLRVTPIVPNWLINIASPVLDVP------LAPFFWGTFLGVAPPSFLYIQAGSTL 208
Query: 51 NILSHSVTPMAYKS 10
LSH+ ++ S
Sbjct: 209 EQLSHTSVAWSWSS 222
>Z98866-11|CAB11564.2| 335|Caenorhabditis elegans Hypothetical
protein Y49E10.14 protein.
Length = 335
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +1
Query: 55 VTRSFDKDD*KRTRCCNSVDHEGFQRFGARSWYFCNRGTDCNQPMVYY 198
+ +F++ + + C + E Q F A + + +DC P+ YY
Sbjct: 189 ICHNFERGNCRYGPRCRFIHVEQMQHFNANATVYAPPSSDCPPPIAYY 236
>U62896-1|AAB17868.1| 335|Caenorhabditis elegans PIE-1 protein.
Length = 335
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +1
Query: 55 VTRSFDKDD*KRTRCCNSVDHEGFQRFGARSWYFCNRGTDCNQPMVYY 198
+ +F++ + + C + E Q F A + + +DC P+ YY
Sbjct: 189 ICHNFERGNCRYGPRCRFIHVEQMQHFNANATVYAPPSSDCPPPIAYY 236
>AY099352-1|AAM34494.1| 891|Caenorhabditis elegans gamma-tubulin
ring protein GRIP-1 protein.
Length = 891
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 271 YITHNSIVWNYVFIGLADCRGNPPDSTPWVDYSLSPCYRSTSF*RRIFET-PHDQRNYNI 95
++ HN + N IGL G P +S P S SP R ++ R+ T DQ+ +I
Sbjct: 95 HLFHNETIRNSPSIGLGSIGGTPTNSIP----SSSPFQRRSASRGRVLSTLTGDQQTPSI 150
Query: 94 AFFFSHLCRNS 62
A S NS
Sbjct: 151 ADSSSRSRANS 161
>AF040644-3|AAP82651.1| 336|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform c protein.
Length = 336
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 271 YITHNSIVWNYVFIGLADCRGNPPDSTPWVDYSLSPCYRSTSF*RRIFET-PHDQRNYNI 95
++ HN + N IGL G P +S P S SP R ++ R+ T DQ+ +I
Sbjct: 95 HLFHNETIRNSPSIGLGSIGGTPTNSIP----SSSPFQRRSASRGRVLSTLTGDQQTPSI 150
Query: 94 AFFFSHLCRNS 62
A S NS
Sbjct: 151 ADSSSRSRANS 161
>AF040644-2|AAN63399.1| 963|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform b protein.
Length = 963
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 271 YITHNSIVWNYVFIGLADCRGNPPDSTPWVDYSLSPCYRSTSF*RRIFET-PHDQRNYNI 95
++ HN + N IGL G P +S P S SP R ++ R+ T DQ+ +I
Sbjct: 95 HLFHNETIRNSPSIGLGSIGGTPTNSIP----SSSPFQRRSASRGRVLSTLTGDQQTPSI 150
Query: 94 AFFFSHLCRNS 62
A S NS
Sbjct: 151 ADSSSRSRANS 161
>AF040644-1|AAB94969.2| 891|Caenorhabditis elegans Gamma-tubulin
interacting proteinprotein 1, isoform a protein.
Length = 891
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 271 YITHNSIVWNYVFIGLADCRGNPPDSTPWVDYSLSPCYRSTSF*RRIFET-PHDQRNYNI 95
++ HN + N IGL G P +S P S SP R ++ R+ T DQ+ +I
Sbjct: 95 HLFHNETIRNSPSIGLGSIGGTPTNSIP----SSSPFQRRSASRGRVLSTLTGDQQTPSI 150
Query: 94 AFFFSHLCRNS 62
A S NS
Sbjct: 151 ADSSSRSRANS 161
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -3
Query: 159 TEVPASSAESLKPLMINGITTSRSFSVIFVETPSNINILSHSVTPMAYKS 10
TE P++ +++ K + + TT+ S + I TP + + +VTP+A S
Sbjct: 568 TETPSTKSKTTKKVKVT--TTTVSTTTITTSTPPSTTSPTTTVTPVATSS 615
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 244 SRQCCYG*CTCVN*APRYSGSC 309
S C + C CVN P+ +GSC
Sbjct: 255 SSNCAHLECLCVNYCPKVTGSC 276
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 244 SRQCCYG*CTCVN*APRYSGSC 309
S C + C CVN P+ +GSC
Sbjct: 238 SSNCAHLECLCVNYCPKVTGSC 259
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 244 SRQCCYG*CTCVN*APRYSGSC 309
S C + C CVN P+ +GSC
Sbjct: 272 SSNCAHLECLCVNYCPKVTGSC 293
>Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical
protein C13C4.3 protein.
Length = 435
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Frame = -3
Query: 165 PVTEVPASSAESLKPLMINGITTSRSFSVIFVET-------PSNINILSHSVTPMAYKSP 7
P T S E L P M + S+ S+ + + PSN + HS T Y P
Sbjct: 9 PSTSEKCLSPELLLPNMDENLEDSKPSSLKYQKAMMSRGTCPSNCKVCRHSATGYHYDVP 68
Query: 6 SC 1
SC
Sbjct: 69 SC 70
>Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical
protein T22C8.5 protein.
Length = 166
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 192 HHGLITVCPPVTEVPASSAESLKPLMINGITTSR 91
HH L ++ PP + S++ S + N +TT R
Sbjct: 19 HHSLPSISPPDSPASTSASSSSSSIGANELTTKR 52
>Z81545-9|CAB04445.1| 173|Caenorhabditis elegans Hypothetical
protein F49H6.12 protein.
Length = 173
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 210 ATPPIVHHGLITVCPPVTEVPASSAESLKPLMINGITTSRSFSVI 76
A PIV ++ V V + A AE +KP +NG+ S S VI
Sbjct: 88 AAGPIVLLTILAVI--VANLTAPPAEIIKPRDVNGVIPSESAEVI 130
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +1
Query: 175 CNQPMVYYRGGCHDNLP-------TQ*IHSSRQCCYG*CTCVN*APRYSGSC 309
CN VYY G C++ + TQ + QC C C + +P +G C
Sbjct: 299 CNSNQVYYNGQCYNTVNIGFQCQITQQCLGNSQCQNSFCQCTSGSPN-NGIC 349
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 210 ATPPIV--HHGLITVCPPVTEVPASSAESLKPL 118
ATP ++ HH +TV P E+ S + +P+
Sbjct: 356 ATPTVIEEHHNEVTVAPEAPEIQEPSEPATEPI 388
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 210 ATPPIV--HHGLITVCPPVTEVPASSAESLKPL 118
ATP ++ HH +TV P E+ S + +P+
Sbjct: 346 ATPTVIEEHHNEVTVAPEAPEIQEPSEPATEPI 378
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 210 ATPPIV--HHGLITVCPPVTEVPASSAESLKPL 118
ATP ++ HH +TV P E+ S + +P+
Sbjct: 346 ATPTVIEEHHNEVTVAPEAPEIQEPSEPATEPI 378
>Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical
protein K02E11.1 protein.
Length = 729
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 195 VHHGLITVCPPVTEVPASSAESLKPLMINGITTSRSFSVIFVETPSNI 52
+ H V P T +P S E + + NGI T + + V PS++
Sbjct: 221 IKHNFQQVLMPFTNLPHVSEEHKQAIDCNGIRTFKDALELMVVHPSSM 268
>Z75955-9|CAB00123.1| 406|Caenorhabditis elegans Hypothetical
protein R07B7.14 protein.
Length = 406
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 144 SSAESLKPLMINGITTSRSFSVIFVETPSNINIL 43
SS S+ P+M N +SF+VI SN++IL
Sbjct: 362 SSILSIMPIMENQQKEEKSFNVILRSFYSNVSIL 395
>Z81119-3|CAB03334.1| 550|Caenorhabditis elegans Hypothetical
protein T10H4.4 protein.
Length = 550
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 217 CRGNPPDSTPW 185
CRG PPDS+P+
Sbjct: 400 CRGKPPDSSPF 410
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 202 GGCHDNLPTQ*IHSSRQ--CCYG*CTCVN 282
GG H +LP Q H SR CY C+N
Sbjct: 316 GGIHCDLPLQRPHCSRSNGTCYNDGRCIN 344
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 202 GGCHDNLPTQ*IHSSRQ--CCYG*CTCVN 282
GG H +LP Q H SR CY C+N
Sbjct: 316 GGIHCDLPLQRPHCSRSNGTCYNDGRCIN 344
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 202 GGCHDNLPTQ*IHSSRQ--CCYG*CTCVN 282
GG H +LP Q H SR CY C+N
Sbjct: 316 GGIHCDLPLQRPHCSRSNGTCYNDGRCIN 344
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 25.4 bits (53), Expect = 8.7
Identities = 7/30 (23%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 280 SHKYITHNSI-VWNYVFIGLADCRGNPPDS 194
+H+++ ++++ WN++ + A+C G+ D+
Sbjct: 1449 AHRFVGNSAVFTWNHLVVIAAECTGSESDA 1478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,625
Number of Sequences: 27780
Number of extensions: 172380
Number of successful extensions: 536
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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