Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A15
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   1.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   6.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 236 IHWVGRLSWQPPR*Y 192
           +++ GR+ W+PP  Y
Sbjct: 131 LNYTGRVEWKPPAIY 145


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 236 IHWVGRLSWQPP 201
           +H+ G++ W PP
Sbjct: 127 LHYTGKVLWTPP 138


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 136 RIFETPHDQRNYNIAFFFSHLCRNS 62
           R+    +  + Y ++  FSH  RN+
Sbjct: 225 RLMSQDNHSKEYLVSIMFSHYDRNN 249


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 236 IHWVGRLSWQPPR*Y 192
           +++ G + WQPP  Y
Sbjct: 135 VYYSGLVVWQPPAVY 149


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 236 IHWVGRLSWQPPR*Y 192
           + + G +SW+PP  Y
Sbjct: 140 LKYTGDVSWKPPAIY 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 59  LGVSTKMTEKERDVVIPLIM 118
           L  S K ++KERD+ + +I+
Sbjct: 508 LNKSLKYSDKERDLSLRMIL 527


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 267 SPITALSGTMYSLGWQIVVATPPIVHHGLITVCPPVTEV 151
           S +TALS  + S    I + T   V HG  T+   ++ V
Sbjct: 27  SKLTALSREVISRQATINIGTIGHVAHGKSTIVKAISGV 65


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 98  HRVLFQSSLSKLRVTSTY 45
           HR+ ++S   ++ VT TY
Sbjct: 88  HRIRWESVQKEVTVTGTY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,945
Number of Sequences: 438
Number of extensions: 2219
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)