Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A15
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15215.1 68417.m02332 ABC transporter family protein similar ...    31   0.21 
At4g11300.1 68417.m01826 expressed protein                             31   0.21 
At3g20720.1 68416.m02622 expressed protein                             29   0.87 
At4g31440.1 68417.m04468 hypothetical protein                          27   2.0  
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si...    27   2.0  
At1g34590.1 68414.m04299 hypothetical protein                          27   2.0  
At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger) fa...    27   3.5  
At5g41440.1 68418.m05033 zinc finger (C3HC4-type RING finger) fa...    25   8.1  
At5g22240.1 68418.m02589 ovate family protein 60% similar to ova...    25   8.1  
At5g01490.1 68418.m00063 cation exchanger, putative (CAX4) ident...    25   8.1  
At4g02330.1 68417.m00317 pectinesterase family protein contains ...    25   8.1  
At1g02810.1 68414.m00239 pectinesterase family protein contains ...    25   8.1  

>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 35  ECDNMLMLLGVSTKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTI-GGVA 211
           E DN+ +L  +  ++ E    + +P +   F D ++EA   V  G+ +   W TI G ++
Sbjct: 83  EADNLRLLRKIRKRIDEV--GIELPTVEVRFNDLSVEAECQVVHGKPIPTLWNTIKGSLS 140

Query: 212 TTICQPNE 235
             +C   E
Sbjct: 141 KFVCSKKE 148


>At4g11300.1 68417.m01826 expressed protein
          Length = 371

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 294 PRGLVHTSTSPITALSGTMYSLGWQIVVATPPIVHHGLITVCP-PVTEVPASSAESL 127
           PRG      SP+  +S  M  + W +VVA P    +GL+   P P  +V A++A S+
Sbjct: 226 PRG---GEASPMYIMSSVMVMVMWTLVVAVPCQTSNGLMVHVPLPKNQVWANAAVSI 279


>At3g20720.1 68416.m02622 expressed protein 
          Length = 1083

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 68  STKMTEKERDVVIPLIMRGFKDSALEAGTSV 160
           S   T KE DV +PL M   +DSA+E   SV
Sbjct: 429 SLLFTLKELDVSVPLDMSNLQDSAIEEDLSV 459


>At4g31440.1 68417.m04468 hypothetical protein
          Length = 379

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 117 MINGITTSRSFSVIFVETPSNINILSHSVTPMAYK 13
           ++NG+ T+ SF +     PS+I    HSV+ + ++
Sbjct: 313 LVNGVRTNNSFHIQTSNQPSDITREQHSVSLLDFR 347


>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 168

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 247 RQCCYG*CTCVN*APRYSGSC 309
           ++CC G CT VN  P + G C
Sbjct: 130 QRCCGGVCTYVNFNPNHCGKC 150


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 71  TKMTEKERDVVIPLIMRGFKDSALEAGTSVTGGQTVINPWCTIGGVATTIC-QPNE 235
           T+  +   D  +PL+ R F  +A EAGTS    Q V  P+     +   +C  PNE
Sbjct: 67  TRELDLPDDPELPLVRRSFASTADEAGTS--NWQDVPEPFMPTVKIEDFLCFGPNE 120


>At3g61550.1 68416.m06894 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 212

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 89  ERDVVIPLIMRGFKDSALEAGTSVTGG--QTVINPW 190
           +R V++P I+   +D  LE+G  V GG   +VIN +
Sbjct: 73  DRGVIVPRIIFVAEDDDLESGNVVVGGLDHSVINSY 108


>At5g41440.1 68418.m05033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 124

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 271 YITHNSIV--WNYVFIGLADCRGNPPDSTP 188
           YI + +IV  W  VFI L  CR  PP   P
Sbjct: 12  YIVYYTIVGFWVIVFIVLLCCRTPPPPPPP 41


>At5g22240.1 68418.m02589 ovate family protein 60% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 196

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 204 PPIVHHGLITVCPPVTEVPASSAESLKPLMINGITTSRSFSVIFVETPSNINIL 43
           PP+    L + CP + E  A + ES+ P      + ++     ++ET S +  L
Sbjct: 80  PPVSPTVLRSPCPKIDESVAMAKESINPFEDYKKSMNQMIEERYIETESELKEL 133


>At5g01490.1 68418.m00063 cation exchanger, putative (CAX4)
           identical to cation/proton antiporter [Arabidopsis
           thaliana] gi|15426028|gb|AAK97656; similar to high
           affinity calcium antiporter CAX1 [Arabidopsis thaliana]
           gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 454

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 189 GVLSGGLPRQSANPMNT*FQTMLLWVMYLCELSPSVLR 302
           G +S     QS +P      +MLL++  LC+  P ++R
Sbjct: 181 GGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMR 218


>At4g02330.1 68417.m00317 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 573

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 152 TSVTGGQTVINPWCTIGGVATTICQPN 232
           T VTG + V++ W T       +  PN
Sbjct: 322 TVVTGNRNVVDGWTTFNSATFAVTSPN 348


>At1g02810.1 68414.m00239 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 579

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 152 TSVTGGQTVINPWCTIGGVATTICQPN 232
           T VTG ++V++ W T       +  PN
Sbjct: 328 TVVTGNRSVVDGWTTFNSATFAVTAPN 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,701,786
Number of Sequences: 28952
Number of extensions: 160915
Number of successful extensions: 380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)