Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A14
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    27   7.0  
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378...    26   9.2  

>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 274 NNLLLNIISKHEAYWRVLFHSNTSE--DDLYKG 366
           NNL+  ++SK    +  LFH +T +  +D YKG
Sbjct: 19  NNLINELLSKEVQPFATLFHFDTPQALEDKYKG 51


>11_04_0096 +
           13435988-13436803,13436880-13437053,13437673-13437834,
           13438548-13438690,13439059-13439134,13439231-13439403,
           13439482-13439563,13439949-13440026,13440369-13440461,
           13441026-13441187,13441225-13441530,13442265-13442369,
           13443097-13443243
          Length = 838

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 18  LFLVLNVLDMSTIYNVFLYYNKIRNLCV 101
           L + + V+ +S+I ++ +Y N+ R+LCV
Sbjct: 563 LKMEMEVIRLSSIAHIHIYVNESRHLCV 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,687,720
Number of Sequences: 37544
Number of extensions: 102505
Number of successful extensions: 183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)