Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A14
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)          27   5.4  
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       26   9.5  

>SB_54378| Best HMM Match : Arena_glycoprot (HMM E-Value=0.71)
          Length = 699

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 34  MFSI*VLYIMCFYITTKSVICVYRKLINVRL 126
           M+ + V Y++C ++T K    V  KL  +RL
Sbjct: 293 MYKVEVFYVLCLFLTGKHKQTVQSKLSELRL 323


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 296 FPNTKRTGASSSTLIPLRMISTRDNRC 376
           F NT R   S+S  IPL+ +S    RC
Sbjct: 543 FKNTSRFAQSASITIPLKALSYGAERC 569


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,937
Number of Sequences: 59808
Number of extensions: 141870
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)