Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A14
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   8.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 285 SKYNFQTRSVLARPLPL*YL*G*SLQGIIDV 377
           S YN   R V     PL    G +LQ IIDV
Sbjct: 64  SSYNTLERPVANESEPLEVKFGITLQQIIDV 94


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 285 SKYNFQTRSVLARPLPL*YL*G*SLQGIIDV 377
           S YN   R V     PL    G +LQ IIDV
Sbjct: 64  SSYNTLERPVANESEPLEVKFGITLQQIIDV 94


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 109 LINVRLSHDAS 141
           LIN+ L HDAS
Sbjct: 176 LINIHLFHDAS 186


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  FLVLNVLDMSTIYNVFLYYNKIRNLCV 101
           F++LN + M  +  + ++Y+    +C+
Sbjct: 268 FMILNEIIMKLVGIIIMWYSPFGIMCL 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,168
Number of Sequences: 438
Number of extensions: 1408
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)