Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A13
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 51 6e-08
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 40 1e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 35 0.006
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 35 0.006
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 27 1.2
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 2.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 2.7
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 4.8
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 6.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.3
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 6.3
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 24 8.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 8.4
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 51.2 bits (117), Expect = 6e-08
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+ R++DPN P++ +SA+ F + + +K NP+A+FG++ ++ W L S + Y
Sbjct: 6 KSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65
Query: 185 KQK 193
++K
Sbjct: 66 EEK 68
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRDTQAAIK---GQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+ RDP +P++P SAY LF ++ ++ IK G+ N EV+K + W L + + Y
Sbjct: 110 KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSN-DVKEVNKAMHEKWGSLSEDDRKTY 168
Query: 185 KQK 193
+++
Sbjct: 169 EEE 171
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 34.7 bits (76), Expect = 0.006
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
+P +A+ L+ ++ A + NP+ + +VSK+V MW E + Y + +E
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 34.7 bits (76), Expect = 0.006
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
+P +A+ L+ ++ A + NP+ + +VSK+V MW E + Y + +E
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRD 76
R R P+ P+KP SA+ LF+++
Sbjct: 140 RLRHPDVPKKPSSAFILFYKE 160
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 2.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 3 TREREREIQMNHKNLCQRMHYFFETRKPQLKDKTQMQALERFLRLSLPCGMV 158
T R + + + HKNLC+ +H + + +D T + F L CG++
Sbjct: 172 TTGRPKVVPLTHKNLCRSIHNITTSYRLDPRD-TSYVVMPLFHVHGLLCGLL 222
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 297 RTMPTQPMATITKASPMAMVIPHKLTYQI--NRHRD 398
+T+ T P ATITK + ++ I + T Q+ RH D
Sbjct: 1312 KTIITMPPATITKKTSLSHTITEEKTAQLLAGRHDD 1347
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 135 ILETSPKLAFGFCPLIAACVSRKNNA 58
+L P +GFC IA KNNA
Sbjct: 218 LLHFRPSSTYGFCTQIAVFHQSKNNA 243
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 419 VPSKVMHIPVAIDLVRKLVGNDHCHRTG 336
VP V H P+ L+ + G+ HC + G
Sbjct: 135 VPDMVCHDPMCDKLLNFINGHIHCRKCG 162
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 101 NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
NPN S +++ VA LDS+ S++K+ E+
Sbjct: 1013 NPNVSIDTMTEGVALPSATLDSDKSSLHKRSAEL 1046
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 148 VGWSGFRTQKCIQTKNRGSKERIFKSIGC 234
+ W G C+ T R KER+F S C
Sbjct: 244 IPWRGRLGYACLNTILRSMKERVFCSRTC 272
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 8.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 310 LNLWQLLPRPVLWQWSFPTSLR 375
+ LW + L++W FPT+++
Sbjct: 76 MRLWDVKTGKQLYKWEFPTAVK 97
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 116 FGEVSKIVASMWDGLDSEHK 175
FG KI+A +WD D E K
Sbjct: 41 FGLPQKILAKIWDYCDQEDK 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,894
Number of Sequences: 5004
Number of extensions: 32715
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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