Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A13
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 76 1e-14
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 59 2e-09
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 4e-07
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 48 2e-06
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 44 7e-05
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 41 4e-04
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 40 8e-04
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 38 0.003
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 38 0.003
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 37 0.006
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 33 0.096
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 32 0.17
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 32 0.22
SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 31 0.29
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 30 0.89
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 30 0.89
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_44390| Best HMM Match : NHL (HMM E-Value=1.9e-16) 29 1.6
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 29 1.6
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 2.7
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 2.7
SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_16196| Best HMM Match : LRR_1 (HMM E-Value=5.7) 27 6.3
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_38438| Best HMM Match : DUF762 (HMM E-Value=2.6) 27 6.3
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +2
Query: 32 EPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
EP KP+SAY +FF++TQAAI+ QNP+A FGE++KIV MW+ L E K VY K E
Sbjct: 924 EPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYHCKHE 979
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 8 GERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 187
G++++DPN P++ +SAY L+ DT+ IK +NP S EVSK+ MW L KS ++
Sbjct: 533 GKKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTD--KSKWE 590
Query: 188 QKTEV 202
+K +
Sbjct: 591 EKAAI 595
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 50.8 bits (116), Expect = 4e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 187
++ +DPN+P++ +SAY F + +K NPNAS G +SK++ MW + + K+ Y+
Sbjct: 94 KQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQ 152
Score = 44.4 bits (100), Expect = 4e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
++DPN+P+ SAY F +D + ++ + S + SK+ A W + E K + QK
Sbjct: 6 KKDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQK 64
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 48.4 bits (110), Expect = 2e-06
Identities = 17/60 (28%), Positives = 36/60 (60%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
+D N P+ P++ Y F + + ++ +NP+ F EV++I+ +MW L + K ++ ++ E
Sbjct: 172 KDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAE 231
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 43.6 bits (98), Expect = 7e-05
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
+ P P+KP+ Y + R +K QNP+ ++ KI+ MW LD K
Sbjct: 23 KPPKPPEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEK 74
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFR---DTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSV 181
++E D N+P+ PV+ Y + R + ++K Q+P+ +F E++K++ W+ L E K
Sbjct: 186 KKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQK 245
Query: 182 YKQKTE 199
+ + E
Sbjct: 246 FLDEAE 251
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 41.1 bits (92), Expect = 4e-04
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNAS----FGEVSKIVASMWDGLDSEHKS 178
++E+DPN P+KP +A+ +F + + ++ + +A+ E++K +A W+ L + K
Sbjct: 47 DKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDEKK 106
Query: 179 VYKQKTE 199
VY + E
Sbjct: 107 VYYEMYE 113
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 39.9 bits (89), Expect = 8e-04
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 50 SAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
S Y LF + + I+ ++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 40 SGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 90
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 39.9 bits (89), Expect = 8e-04
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 50 SAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
S Y LF + + I+ ++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 1273 SGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 1323
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +2
Query: 2 HEGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSV 181
H E E D + ++P++++ ++ + + +NP E+SK++ W+ L ++ K
Sbjct: 83 HRYEDEEDDSHVKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRP 142
Query: 182 YKQKTE 199
+ +K E
Sbjct: 143 FVEKAE 148
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +2
Query: 23 DPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
DPN+P+ P+++Y + + +A + + PN E++ ++ W + E K Y ++ E
Sbjct: 148 DPNQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYE 206
Score = 30.3 bits (65), Expect = 0.68
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY--K 187
+ + PN + P+SA+ L+ + + NP+ S ++ K + W +D + K + K
Sbjct: 221 KNKYPNV-EPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKK 279
Query: 188 QKTEV 202
+KTE+
Sbjct: 280 EKTEM 284
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
K + ++L+ + + I+ +NP+ +V KI W GLDS K V+ +K +
Sbjct: 331 KKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKAK 383
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 33.1 bits (72), Expect = 0.096
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 187
K + ++L+ + + I+ +NP+ +V KI W GLDS K + K
Sbjct: 38 KKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKLEK 86
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 32.7 bits (71), Expect = 0.13
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 2 HEGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSV 181
+E + + ++P++A+ ++ R+ + + NP E+SK + S W L + K
Sbjct: 778 NESTKANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRP 837
Query: 182 Y 184
Y
Sbjct: 838 Y 838
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 32.3 bits (70), Expect = 0.17
Identities = 14/57 (24%), Positives = 33/57 (57%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
R+ + + ++P++A+ ++ R ++ I + P A+ E+S + +W+ L SE + Y
Sbjct: 94 RQENNAKVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQKPY 150
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
++P++A+ ++ R+ + I +NP E+SK + S W L + K + ++ +
Sbjct: 328 KRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAK 381
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
++P++A+ ++ R+ + I +NP E+SK + S W L + K + ++ +
Sbjct: 11 KRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAK 64
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 31.9 bits (69), Expect = 0.22
Identities = 11/52 (21%), Positives = 29/52 (55%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
++P++++ ++ ++ + A+ +NP E+SKI+ W + K Y ++
Sbjct: 11 KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEE 62
>SB_14964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 31.9 bits (69), Expect = 0.22
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 276 FSCSPPFDTKLAL*AANAFKYSFFATSVFCLYTLL-CSESRPSHMEATILETS 121
F C+P +TK+ N + S F T C + L C E RP H++AT T+
Sbjct: 537 FPCTPANNTKMKAWLLNRYSSSTFNT---CPHRALPCMEGRPLHVDATAKPTA 586
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
E D ++P++A+ ++ R + + + PN E+SK++ + W L E K
Sbjct: 3 ETDDQHIKRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEK 55
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 29.9 bits (64), Expect = 0.89
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 347 HRTGLGNSCHRLSWHCSSDCTLLDSLVHRPSIP 249
HR G SC+ S +SDC+ +S HR +P
Sbjct: 179 HRCVFGKSCYGRSCDLTSDCSEGESCCHRTCLP 211
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 29.9 bits (64), Expect = 0.89
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 347 HRTGLGNSCHRLSWHCSSDCTLLDSLVHRPSIP 249
HR G SC+ S +SDC+ +S HR +P
Sbjct: 101 HRCVFGKSCYGRSCDLTSDCSEGESCCHRTCLP 133
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
++P++AY ++ R + I + P E+SK + W+ L + K Y ++ +
Sbjct: 9 KRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAK 62
>SB_44390| Best HMM Match : NHL (HMM E-Value=1.9e-16)
Length = 475
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPN-ASFGE 124
QKP+SA AL D +KG +PN SF E
Sbjct: 56 QKPISAAALNMHDRLKMLKGSHPNEQSFSE 85
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+ + ++DP++P++P +AY LF + + G+ ++ + W + E K Y
Sbjct: 567 KNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDG-KKIPSLAGERWREMSDEDKKPY 625
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
++P++A+ ++ + + +NP ++SK++ + W L E K +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKF 56
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 28.3 bits (60), Expect = 2.7
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
++P++A+ ++ + + +NP ++SK++ + W L E K +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKF 56
>SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 327 ITKASPMAMVIPHKLTYQINRHRDMHHLTRD 419
I S V+ H + Y I H D HH+ RD
Sbjct: 710 IALTSVTCKVMEHIVYYHIYAHLDRHHILRD 740
>SB_16196| Best HMM Match : LRR_1 (HMM E-Value=5.7)
Length = 238
Score = 27.1 bits (57), Expect = 6.3
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Frame = +2
Query: 107 NASFGEVSKIVASMWD-GLDSEHKSVYKQKT-EVXXXXXXXXXXXXXXSLVSKGGEQENP 280
N + GE+S A + D G+ +SV K K+ +V +++ + ++
Sbjct: 104 NTNLGELSVAYAGIDDEGMCELARSVAKNKSLQVLTITYNNISEKGKRAIIKACAKSQSL 163
Query: 281 TMYNHSNNANSTXXXXXXXXXXXXXHSPQAYVPNQSPQGYASPY 412
H N+ P SPQG+ SPY
Sbjct: 164 NHLFHENDPILNTCLKPHSVCLLYSREVSRIAPRSSPQGFTSPY 207
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 210 FFATSVFCLYTLLCSESRP 154
FFA C Y LLCS S P
Sbjct: 104 FFAMISLCFYVLLCSNSLP 122
>SB_38438| Best HMM Match : DUF762 (HMM E-Value=2.6)
Length = 297
Score = 27.1 bits (57), Expect = 6.3
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Frame = +2
Query: 14 RERDPNEPQKPVS-AYA---LFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSV 181
RE+D +E +K S Y L F D +KG+ G+ + +W+ L SE V
Sbjct: 120 REKDESEIRKSASDEYTNRMLEFFDVAKNLKGEERFKEIGDKHHALTQIWNKLRSEDGVV 179
Query: 182 YKQKTEVXXXXXXXXXXXXXXSLVSKGGEQENPTMYNH 295
K V V GG + + +H
Sbjct: 180 KKFGKPVELSGYQVRANKVTDQFVFAGGSDDPEIIKDH 217
>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 258 FDTKLAL*AANAFKYSFFATSVFCLYTLLCSESRPSHMEATILETSPKLAFGFC 97
FD K A + F+YS+ + Y + C R SH T E + FC
Sbjct: 62 FDKKFA---PDTFRYSYSKRATSFDYEVNCGGFRNSHFSCTTEEAKRMFSRSFC 112
>SB_2643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 258 RAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQINRHRDMHH 407
R +R+ TIT T + IT +SP + + P L+YQ + H +H
Sbjct: 12 RHKGERVLAFTITITTI---IIIITTSSPSSSLTPSSLSYQHHHHHHHYH 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,437
Number of Sequences: 59808
Number of extensions: 252479
Number of successful extensions: 777
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -