Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A13
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 57 4e-09
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 50 9e-07
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 50 9e-07
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 50 9e-07
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 45 3e-05
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 45 3e-05
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 45 3e-05
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 45 3e-05
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 41 3e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 40 7e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 40 7e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 40 7e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 40 7e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 40 7e-04
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 40 0.001
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 36 0.016
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 36 0.016
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 32 0.19
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 32 0.19
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 31 0.44
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 28 2.4
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 28 3.1
U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical pr... 27 5.5
U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase pro... 27 5.5
AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kin... 27 5.5
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 27 7.2
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 27 7.2
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 27 7.2
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 199
+ SAYALFFR+ Q+ K P A+FG++S+ +A WD L E K YKQ+ E
Sbjct: 51 RSTSAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCE 103
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 49.6 bits (113), Expect = 9e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
K S Y LF + + I +NP+A FGEVSKIV W L E K Y+ + EV
Sbjct: 1451 KSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 49.6 bits (113), Expect = 9e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
K S Y LF + + I +NP+A FGEVSKIV W L E K Y+ + EV
Sbjct: 1451 KSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 49.6 bits (113), Expect = 9e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +2
Query: 41 KPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEV 202
K S Y LF + + I +NP+A FGEVSKIV W L E K Y+ + EV
Sbjct: 81 KSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 134
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
++DP+ P++ +SA+ + +D + I+ +P+ G+V++ + MW + E K +Y+QK
Sbjct: 128 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 187
Query: 197 E 199
+
Sbjct: 188 Q 188
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
++DP+ P++ +SA+ + +D + I+ +P+ G+V++ + MW + E K +Y+QK
Sbjct: 127 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 186
Query: 197 E 199
+
Sbjct: 187 Q 187
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
++DP+ P++ +SA+ + +D + I+ +P+ G+V++ + MW + E K +Y+QK
Sbjct: 129 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 188
Query: 197 E 199
+
Sbjct: 189 Q 189
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
++DP+ P++ +SA+ + +D + I+ +P+ G+V++ + MW + E K +Y+QK
Sbjct: 129 KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKA 188
Query: 197 E 199
+
Sbjct: 189 Q 189
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+G++ +DPNEP++ +AY ++F + ++K + G+V+K + W + ++ K +
Sbjct: 551 KGKKTKDPNEPKRATTAYIIWFNANRNSMK--EDGDTLGDVAKKAGAKWKSMSADDKKEW 608
Query: 185 KQK 193
K
Sbjct: 609 NDK 611
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ PN ++P++A+ ++ RD + I P+ +SKI+ S W G+ + K Y ++
Sbjct: 173 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 230
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ PN ++P++A+ ++ RD + I P+ +SKI+ S W G+ + K Y ++
Sbjct: 170 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 227
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ PN ++P++A+ ++ RD + I P+ +SKI+ S W G+ + K Y ++
Sbjct: 276 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 333
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ PN ++P++A+ ++ RD + I P+ +SKI+ S W G+ + K Y ++
Sbjct: 324 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 381
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 39.9 bits (89), Expect = 7e-04
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ PN ++P++A+ ++ RD + I P+ +SKI+ S W G+ + K Y ++
Sbjct: 324 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEE 381
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+G++++DPN P++ SAY +F ++ +K S +V+K + W + S+ K +
Sbjct: 546 KGKKDKDPNAPKRATSAYMQWFLASRNELK--EDGDSVADVAKKGGAKWKTMSSDDKKKW 603
Query: 185 KQKTE 199
++K E
Sbjct: 604 EEKAE 608
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 29 NEP--QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY-KQKTE 199
NEP ++P++A+ +F + + + Q PN VSKI+ W L ++ K+ Y K T+
Sbjct: 839 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQ 898
Query: 200 V 202
V
Sbjct: 899 V 899
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 29 NEP--QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY-KQKTE 199
NEP ++P++A+ +F + + + Q PN VSKI+ W L ++ K+ Y K T+
Sbjct: 839 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQ 898
Query: 200 V 202
V
Sbjct: 899 V 899
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 29 NEP--QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY-KQKTE 199
NEP ++P++A+ +F + + + Q PN VSKI+ W L ++ K+ Y K T+
Sbjct: 74 NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQ 133
Query: 200 V 202
V
Sbjct: 134 V 134
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
+G + +DPN P++ +SA+ + ++ + IK P +V+K W L + +
Sbjct: 18 KGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSR 72
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
+G + +DPN P++ +SA+ + ++ + IK P +V+K W L + +
Sbjct: 18 KGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSR 72
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
++ N ++P++A+ ++ + + I P+ E+SK + S W L E K+ + +
Sbjct: 87 KKSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEA 146
Query: 197 E 199
E
Sbjct: 147 E 147
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/53 (20%), Positives = 29/53 (54%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
+++ + ++P++A+ ++ R + + +NP E+SK + + W L + K
Sbjct: 54 KKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEK 106
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 252 YRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQIN 386
YR + ++ T+T T+P +A +T + + HK+TY I+
Sbjct: 251 YRIIIRRKAIFFTVTLTIPCMLIANVTPFVFLILPNEHKMTYSIS 295
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 38 QKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHK 175
++P++A+ ++ R + + NP E+SK + + W L + K
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEK 94
>U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical
protein T01D1.5 protein.
Length = 337
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 259 GR*TRESNNVQSLEQCQLNLWQLLPRPVLWQWSFPTSLRT 378
GR ++ S + ++ +W L+P + W W P ++ T
Sbjct: 137 GRHQKKKTIRNSFQSMKIIIWMLMPLSIGWIWFLPDAVIT 176
>U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase
protein 3 protein.
Length = 615
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 3 TREREREIQMNHKNLCQRMHYFFE 74
TRE E Q++H+N+ Q H+FFE
Sbjct: 81 TREVEIHRQLSHRNIVQ-FHHFFE 103
>AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kinase
protein.
Length = 615
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 3 TREREREIQMNHKNLCQRMHYFFE 74
TRE E Q++H+N+ Q H+FFE
Sbjct: 81 TREVEIHRQLSHRNIVQ-FHHFFE 103
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 210 FFATSVFCLYTLLCSESR 157
FF ++VFCL+ L+C++ +
Sbjct: 496 FFLSAVFCLFVLVCAKEQ 513
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 270 KRIQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQINRHR 395
K++ C+I + TQ M+T+T SP A P + + R
Sbjct: 354 KKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLLGSQR 395
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 210 FFATSVFCLYTLLCSESR 157
FF ++VFCL+ L+C++ +
Sbjct: 496 FFLSAVFCLFVLVCAKEQ 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,768,281
Number of Sequences: 27780
Number of extensions: 188499
Number of successful extensions: 590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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