Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A13
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.80 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.80 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   4.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   9.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 249 WYRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPH 365
           W R  VN+++    ++  +  +P   + K  PM  V+PH
Sbjct: 128 WARFNVNEQMYLYALSVAVIHRPDTKLMKLPPMYEVMPH 166


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 249 WYRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPH 365
           W R  VN+++    ++  +  +P   + K  PM  V+PH
Sbjct: 128 WARFNVNEQMYLYALSVAVIHRPDTKLMKLPPMYEVMPH 166


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = +3

Query: 225 HWLLTELAWYRRAV-NKR 275
           HW+ T   W RR V NK+
Sbjct: 175 HWIWTPHGWMRRNVLNKQ 192


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 33  NHKNLCQRMHYFFETRKPQLKDKTQMQALER 125
           NHK++  R H      + Q K+  QM+  ER
Sbjct: 50  NHKSIYHRQH---SKNEQQRKEMEQMRERER 77


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 156 PSHMEATILETSPKLAFGFCPLIAACVSRKNN 61
           P     T+ ET+P+      PL   CV  +NN
Sbjct: 15  PDLDNVTMPETTPRRKKNKKPLPTECVFCRNN 46


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 204 ATSVFCLYTLLCSESRPSHMEATILETS 121
           A  +FC  T+ C +   + +   ++ETS
Sbjct: 159 ANEMFCETTIGCKDKNMAPILKDLMETS 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,464
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)