Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A13
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 52 2e-07
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 52 2e-07
At3g28730.1 68416.m03587 structure-specific recognition protein ... 51 4e-07
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 49 1e-06
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 46 1e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 44 3e-05
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 44 3e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 4e-05
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 43 7e-05
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 42 1e-04
At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro... 42 2e-04
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ... 32 0.18
At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro... 31 0.24
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 31 0.24
At2g26580.2 68415.m03189 plant-specific transcription factor YAB... 31 0.42
At2g26580.1 68415.m03188 plant-specific transcription factor YAB... 31 0.42
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic... 30 0.73
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor... 30 0.73
At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) i... 29 0.97
At3g55690.1 68416.m06187 expressed protein predicted proteins, A... 28 2.2
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 28 3.0
At1g68410.1 68414.m07815 protein phosphatase 2C-related / PP2C-r... 28 3.0
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 27 3.9
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 27 5.2
At3g25130.1 68416.m03138 expressed protein 27 5.2
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2... 26 9.0
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 52.0 bits (119), Expect = 2e-07
Identities = 21/64 (32%), Positives = 39/64 (60%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQ 190
++++D E ++P S+Y L+ +D +K +NP A F E S I+ + W L +E K Y++
Sbjct: 130 KKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEE 189
Query: 191 KTEV 202
+ +V
Sbjct: 190 RYQV 193
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 23 DPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
DPN+P+KP S+Y LF +D + + + P + V+ +++ W L E K VY K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGK 431
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+ ++E+DP +P+ PVSA+ ++ + +AA++ + N S EV+KI W L + K+ Y
Sbjct: 245 KNKKEKDPLKPKHPVSAFLVYANERRAALREE--NKSVVEVAKITGEEWKNLSDKKKAPY 302
Query: 185 KQ 190
++
Sbjct: 303 EK 304
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 52.0 bits (119), Expect = 2e-07
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQ 190
++++D E ++P + Y L+ +D +K QNP A F E S I+ + W G+ +E K Y++
Sbjct: 121 KKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEE 180
Query: 191 K 193
K
Sbjct: 181 K 181
Score = 49.6 bits (113), Expect = 8e-07
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVY 184
+ ++ +DP +P++P+SAY ++ + +AA+KG+ N S EV+K+ W L E K+ Y
Sbjct: 236 KAKKIKDPLKPKQPISAYLIYANERRAALKGE--NKSVIEVAKMAGEEWKNLSEEKKAPY 293
Query: 185 KQ 190
Q
Sbjct: 294 DQ 295
Score = 48.0 bits (109), Expect = 3e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 23 DPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
DPN+P+KP S+Y LF +D + ++ ++P + V+ ++ W L E K VY K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSK 424
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 50.8 bits (116), Expect = 4e-07
Identities = 19/64 (29%), Positives = 39/64 (60%)
Frame = +2
Query: 11 ERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQ 190
++++DPN P++ +S + F + + IK ++P +FGEV K++ W + ++ K Y+
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613
Query: 191 KTEV 202
K +V
Sbjct: 614 KAQV 617
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
+DPN+P++P SA+ +F D + K +NP N S V K W L K+ Y K
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 197 E 199
E
Sbjct: 93 E 93
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 17 ERDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVASMWDGLDSEHKSVYKQK 193
++DPN+P++P SA+ +F D + NP N S V K + W + E K+ Y K
Sbjct: 29 KKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAK 88
Query: 194 TE 199
E
Sbjct: 89 AE 90
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-SFGEVSKIVASMWDGLDSEHKSV 181
E + ++DPN+P++ SA+ +F D + K +NPN + V K W + K+
Sbjct: 43 EKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 102
Query: 182 YKQK 193
Y++K
Sbjct: 103 YEEK 106
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-SFGEVSKIVASMWDGLDSEHKSV 181
E + ++DPN+P++ SA+ +F D + K +NPN + V K W + K+
Sbjct: 43 EKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 102
Query: 182 YKQK 193
Y++K
Sbjct: 103 YEEK 106
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.0 bits (99), Expect = 4e-05
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVASMWDGLDSEHKSVYKQKT 196
+DPN+P++P SA+ +F D + K ++P N S V K W L K+ Y K
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 197 E 199
+
Sbjct: 90 D 90
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 43.2 bits (97), Expect = 7e-05
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 8 GERERDPNEPQKPVSAYALFFRDTQAAIKGQNP-NASFGEVSKIVASMWDGLDSEHKSVY 184
G++ +DPN P+KP S + +F D + NP N S G V + W + E ++ +
Sbjct: 25 GKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPF 84
Query: 185 KQKTE 199
K++
Sbjct: 85 VAKSQ 89
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
+ RDP+ P+ S Y FF + A +K +P ++S+++ +W+ L+ + K +Y+ K
Sbjct: 256 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPGKD-RDISRMIGELWNKLNEDEKLIYQGK 314
>At1g76110.1 68414.m08838 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to high mobility group protein
[Plasmodium falciparum] GI:790198; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 338
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 14 RERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 187
R DPN P+ S Y FF + +K PN E +K++ W L +E + VY+
Sbjct: 248 RREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKE-REFTKLIGESWSNLSTEERMVYQ 304
>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
Length = 231
Score = 31.9 bits (69), Expect = 0.18
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEH 172
+ P + Q+ SAY F ++ +K QNP+ + E + A W H
Sbjct: 130 KPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>At3g13350.1 68416.m01680 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 319
Score = 31.5 bits (68), Expect = 0.24
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 23 DPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 193
D +P+ S Y FF + A +K + + ++K + MW L K VY+ K
Sbjct: 234 DTQKPKCHRSGYNFFFAEQYARLKPEY-HGQERSITKKIGHMWSNLTESEKQVYQDK 289
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 35 PQKPVSAYALFFRDTQAAIKGQNPNA-SFGEVSKIVASMWDGLDSEHKSVY 184
P+KP +A+ F D + + +NP+ S E+ K W + E K Y
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKY 113
>At2g26580.2 68415.m03189 plant-specific transcription factor YABBY
family protein contains Pfam profile: PF04690 YABBY
protein
Length = 164
Score = 30.7 bits (66), Expect = 0.42
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMW 151
R P + Q+ SAY F ++ IK NP+ S E A W
Sbjct: 100 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 143
>At2g26580.1 68415.m03188 plant-specific transcription factor YABBY
family protein contains Pfam profile: PF04690 YABBY
protein
Length = 164
Score = 30.7 bits (66), Expect = 0.42
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMW 151
R P + Q+ SAY F ++ IK NP+ S E A W
Sbjct: 100 RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNW 143
>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
to YABBY3 [Arabidopsis thaliana] GI:4928753
Length = 240
Score = 29.9 bits (64), Expect = 0.73
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMW 151
R P + Q+ SAY F ++ IK NP+ S E A W
Sbjct: 148 RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW 191
>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
floral organs protein (AFO) / filamentous flower protein
(FIL) identical to YABBY1 [Arabidopsis thaliana]
GI:4928749, abnormal floral organs protein (AFO)
[Arabidopsis thaliana] GI:4322477; supporting cDNA
gi|4322476|gb|AF087015.1|AF087015
Length = 229
Score = 29.9 bits (64), Expect = 0.73
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMW 151
R P + Q+ SAY F ++ IK NP+ S E A W
Sbjct: 136 RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW 179
>At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW)
identical to transcription factor CRC (CRABS CLAW)
GI:4836698 [Arabidopsis thaliana]
Length = 181
Score = 29.5 bits (63), Expect = 0.97
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 20 RDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSKIVASMW 151
+ P + Q+ SAY F RD IK NP E A W
Sbjct: 110 KPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNW 153
>At3g55690.1 68416.m06187 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 293
Score = 28.3 bits (60), Expect = 2.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 313 NLWQLLPRPVLWQWSFPTSLRTKSIATGI 399
N W + P PV ++ PT++++ S TG+
Sbjct: 190 NAWHIPPSPVRAFYTLPTAVKSPSTGTGV 218
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 139 RFHVGWSGFRTQKCIQTKNRGSKERIFKSIGCLQS 243
R++ S F ++ + G KER+FKS G + S
Sbjct: 13 RYNFAPSSFGAVSKLEVSSGGDKERVFKSFGLIYS 47
>At1g68410.1 68414.m07815 protein phosphatase 2C-related /
PP2C-related similar to protein phosphatase-2C
GB:AAC36697 from [Mesembryanthemum crystallinum]
Length = 436
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 5 EGERERDPNEPQKPVSAYALFFRDTQAAIKGQNPNASFGEVSK 133
EG+R ++ +K V AL R+T+AA K + P FG+ ++
Sbjct: 5 EGKRRNHNHDDEKLVPLAALISRETKAA-KMEKPIVRFGQAAQ 46
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 50 SAYALFFRDTQAAIKGQNPNASFGEV 127
S Y R TQ AIK NPN+S G V
Sbjct: 494 SIYVGLLRHTQVAIKMLNPNSSQGPV 519
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 119 GEVSKIVASMWDGLDSEHKSVYK 187
G++ KI+ +DGLDSE + +++
Sbjct: 418 GKIEKILRISYDGLDSEDQEIFR 440
>At3g25130.1 68416.m03138 expressed protein
Length = 406
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 225 AFKYSFFATSVFCLYTLLCS-ESRPSHMEATILETSPKLAFGFCPLIAACVSRK 67
+F F T+ L LL + + + +++ LET P F FC + + + K
Sbjct: 57 SFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFSFCSKLGSVLEHK 110
>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
plant glutamate receptor family, PMID:11379626
Length = 940
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 74 LEKIMHTLTQVFVVHLDLSLSL 9
L K+M +VFVVH++ SL+L
Sbjct: 209 LRKLMERQARVFVVHMESSLAL 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,524
Number of Sequences: 28952
Number of extensions: 177312
Number of successful extensions: 527
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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