Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A12
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.77 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 533 PPPRISWLKHGSPLQQDHN 477
           P   ISWLK G P+  DHN
Sbjct: 355 PIKTISWLKDGHPI--DHN 371



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 533  PPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
            PPP I+W   G        +    +G+L I
Sbjct: 1334 PPPVITWKIKGVQFTTSDKIRQQPDGSLFI 1363


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 TPPAAAPPPRISWLKHGSP 495
           T PAAAPPP  +    GSP
Sbjct: 28  TSPAAAPPPATT--SSGSP 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,412
Number of Sequences: 336
Number of extensions: 1608
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)