Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A12
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0286 + 17317316-17317516,17317610-17318245                       29   2.5  
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984...    27   7.5  
05_06_0226 + 26561673-26562908                                         27   10.0 

>02_03_0286 + 17317316-17317516,17317610-17318245
          Length = 278

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 343 YKFTEFLVLFLWSIIYRYRNRQTNNILTCKVARDISKFPS 462
           YK  E L    + ++YR R+R+T   +  K  RD++  PS
Sbjct: 37  YKRMETLGAGTYIVVYRARDRRTGETVAVKWLRDVAANPS 76


>03_02_0613 -
           9848514-9848539,9848942-9849200,9849326-9849365,
           9849952-9850117,9850228-9850756
          Length = 339

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 551 TPPAAAPPPRISWLKHGSPLQQDHNVL 471
           T P   PPP   +  HG   QQ H VL
Sbjct: 196 TTPPPPPPPAAHYAAHGGHHQQYHGVL 222


>05_06_0226 + 26561673-26562908
          Length = 411

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 548 PPAAAPPPRISWL 510
           PPA APPP + WL
Sbjct: 51  PPAPAPPPALPWL 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,289
Number of Sequences: 37544
Number of extensions: 173375
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)