Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A12
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 39 0.002
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_47306| Best HMM Match : I-set (HMM E-Value=0) 35 0.051
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 33 0.21
SB_24472| Best HMM Match : I-set (HMM E-Value=0) 32 0.36
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 31 0.63
SB_23359| Best HMM Match : I-set (HMM E-Value=0) 31 0.83
SB_11883| Best HMM Match : I-set (HMM E-Value=0) 31 0.83
SB_51604| Best HMM Match : I-set (HMM E-Value=2.3e-21) 30 1.1
SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 30 1.4
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39) 29 1.9
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_43033| Best HMM Match : I-set (HMM E-Value=3.3e-18) 29 3.3
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 29 3.3
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 4.4
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 28 5.8
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 28 5.8
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = -3
Query: 542 AAAPPPRISWLKHGSPLQQDHNVLISAEG---NLLISRATLQVSILFVCL 402
+ +P PRI W + P+ +D ++ S++G L I++ATLQ + ++ CL
Sbjct: 4479 SGSPAPRIQWFMNDQPVSRDSRIITSSDGPVHKLAITKATLQDTGVYKCL 4528
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG---NLLISRATLQVSILFVC 405
P P++ W K+ P++ DH V +G L++ R TL+ + L+ C
Sbjct: 4780 PLPKVEWFKNDKPVKHDHLVRSYFDGKVIRLIVRRTTLEDAGLYRC 4825
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 536 APPPRISWLKHGSPLQQDHNVLISAEGNL 450
+P P I+W K G PL + I + GN+
Sbjct: 2862 SPTPHITWYKDGEPLDDTRRIDIRSRGNV 2890
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLL 447
P P + W K G PL+ +H ++ S E ++
Sbjct: 757 PNPEVEWFKDGKPLKANHRLVPSFEERMI 785
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG 456
P P ISW K G P++ D V S +G
Sbjct: 212 PKPVISWYKDGQPIKADRRVKDSFDG 237
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGN---LLISRATLQVSILFVCLFR 396
P P + W + P+ +DH + ++G LL+ + + + +F C+ R
Sbjct: 5571 PVPVVEWYRDDRPVTRDHRLRTYSDGRVVILLLRQTNISDAGVFKCVLR 5619
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG 456
P P+I W K+G P++ D + +G
Sbjct: 2962 PKPQIKWTKNGKPVESDGRLRTDYDG 2987
>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 542 AAAPPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQVSILFVCLFRYRY 387
+ PPP WLK+G P+ H + I L I L + ++C+F Y
Sbjct: 274 SGVPPPYSYWLKNGLPVVPSHRIRIVKNRYLKIKSTVLGDAGEYICVFNNTY 325
>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
Length = 1260
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAE---GNLLISRATLQVSILFVCL 402
P P + WLK G PL +D +V E L ATL+ L+ C+
Sbjct: 455 PEPTVEWLKEGKPLSRDSHVRPKYEAEIATLTFKSATLEDEALYTCV 501
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG---NLLISRATLQVSILFVC 405
P P + WLK PL +D + G L + +A L+ L+ C
Sbjct: 1085 PEPSVEWLKDDKPLPRDQRLTPMYNGEVATLKLQKAILEDEALYTC 1130
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 548 PPAAAPPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQVSILFVCLFR 396
P +P P + W K G P+ V ++ G+L+I + S +VC R
Sbjct: 253 PVTGSPKPLVDWSKTGQPIISGDRVSVTVTGSLVIVNSRSSDSGEYVCTAR 303
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG-NLLISRATLQVSILFVC 405
P PR++W ++G+ + Q ++A+G +LI A + + F C
Sbjct: 479 PAPRVTWRQNGNAISQGGRYRVTADGVTMLIDGAVVSDTGSFTC 522
>SB_24472| Best HMM Match : I-set (HMM E-Value=0)
Length = 473
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQVSILFVCLFR 396
P P+ISW K PL D ++ +G L I R ++ + CL R
Sbjct: 128 PAPQISWRKDRQPLPSDGRHVVRPDGTLDILRPQVEDEGNYECLAR 173
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG---NLLISRATLQVSILFVCLFR 396
P P I W K+G PL+++ + + EG +L I++ T+ + C+ R
Sbjct: 3380 PRPSIEWFKNGLPLKENERIASTYEGALSSLTINQCTIDDEGNYKCVAR 3428
>SB_23359| Best HMM Match : I-set (HMM E-Value=0)
Length = 367
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 542 AAAPPPRISWLKHGSPLQ--QDHNVLISAEGNLL 447
A PPP I+W + G P+ QD++ EGN+L
Sbjct: 31 AGMPPPFITWSRDGQPINNTQDNSTAHVIEGNVL 64
>SB_11883| Best HMM Match : I-set (HMM E-Value=0)
Length = 616
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 548 PPAAAPPPRISWLKHGSPLQQDHNVLI-SAEGNLLISRATLQVSILFVCL 402
P P P I+WLK G PL+Q V + + G L + + + L++C+
Sbjct: 549 PVRGFPLPSITWLKDGQPLKQSMTVKVNNLTGTLYLLSILERRAGLYMCV 598
>SB_51604| Best HMM Match : I-set (HMM E-Value=2.3e-21)
Length = 152
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG-NLLISRATLQVSILFVC 405
P PR++W ++G+ + Q ++A+G +LI A + + F C
Sbjct: 90 PAPRVTWRQNGNAISQGGRYRVTADGVTMLIDGAVVSDTGSFTC 133
>SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQ-QDHNVLISAEGNLLISRAT 432
PPP+ W K+G P+ D +S G+L I T
Sbjct: 28 PPPKYIWTKNGQPINLADDRYTVSPSGSLSIKGVT 62
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLIS-AEGNLLISRATLQVSILFVCL 402
P P W K SP ++N S +EGNL+ ++ + + CL
Sbjct: 981 PTPSYQWFKDDSPFDAENNTRASLSEGNLIFTKISRDDHGQYYCL 1025
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLIS-AEGNLLISRATLQVSILFVCL 402
P P W K SP +N S +EGNL+ ++ + + CL
Sbjct: 1073 PSPSYQWFKDDSPFDAKYNTRASLSEGNLIFTKVSRDDHGQYYCL 1117
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLIS-AEGNLLISRATLQVSILFVCL 402
P P W K SP +N S +EGNL+ ++ + + CL
Sbjct: 1165 PTPSYQWFKDDSPFDAGNNARASLSEGNLIFTKVSRDDHGQYYCL 1209
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEG-NLLISRATLQVSILFVC 405
PPP ++WLK+GS L + + G +L+I+ S + C
Sbjct: 890 PPPTVTWLKNGSALNTSVDPRFYSNGTHLMITNVNRTDSGAYRC 933
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
P P+I W+K PL+ D VL + +G +
Sbjct: 1408 PQPKIDWMKDDKPLKPDKRVLPTYDGETCV 1437
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNL 450
P P I+W + +P+ D+ V+ S EG++
Sbjct: 2251 PKPTITWFRDNTPVHTDNRVVASYEGSV 2278
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
P P + W K PL +D ++I +G+ I
Sbjct: 540 PKPEVHWTKDNKPLTEDDRIIIDHKGDSCI 569
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGN---LLISRATLQVSILFVCL 402
P P + W K LQ+ V I +GN L+I +A+L S ++ C+
Sbjct: 1863 PTPDVMWYKDDKELQESQLVKIIPKGNMYYLIIYKASLNDSGIYRCV 1909
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQV 423
P P + W+ G +Q DH + + +G R TL++
Sbjct: 54 PTPTVEWMVDGEKVQDDHRIKTTFDG----ERCTLKI 86
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 539 AAPPPRISWLKHGSPLQQDHNVLISAEGNL 450
A P P + W K G PL+ I A +L
Sbjct: 1307 AKPKPNVKWYKDGKPLRDGPRTTIRARDDL 1336
>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
Length = 788
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLISR 438
P + +W K G+ L++ V S++GNL +SR
Sbjct: 154 PKTQYTWRKSGALLRETDEVSFSSQGNLYLSR 185
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 533 PPPRISWLKHGSPL 492
PPPRI+WLK+G L
Sbjct: 402 PPPRITWLKNGKEL 415
>SB_43033| Best HMM Match : I-set (HMM E-Value=3.3e-18)
Length = 93
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLIS-AEGNLLISRATLQVSILFVCL 402
P P W K SP ++N S ++GNL+ ++ + + CL
Sbjct: 30 PTPSYQWFKDDSPFDAENNTRASLSQGNLIFTKISRDDHGQYYCL 74
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGN 453
P P+++W K G L++ N+ + + GN
Sbjct: 1548 PKPKVTWYKDGKVLRETRNIQLMSIGN 1574
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGN---LLISRATLQVSILFVC 405
P P+++WLK G L ++ + G+ L+I ++T + + + C
Sbjct: 970 PKPQVTWLKDGKTLSSSKRIVPTVRGDTYELVIKKSTPEDTGTYTC 1015
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNV 474
P P ++W K G PL++ N+
Sbjct: 1259 PKPEVTWFKDGKPLRESKNI 1278
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 527 PRISWLKHGSPLQQDHNVLISAEGNLLI 444
P I W K G P++ DH + S G I
Sbjct: 1645 PIIKWFKDGEPVKSDHRIKPSYYGKTCI 1672
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 542 AAAPPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQVSILFVC 405
A +P P WLK G L + + A G+L+I + C
Sbjct: 498 AGSPTPYFRWLKSGKSLTMGGRMSVIAGGSLMIESTMASDEANYTC 543
>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 551 TPPAAAPPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
T P A +W + P+ DH V +++ G+LLI
Sbjct: 12 TCPRARGALTYTWYHNAVPVSPDHRVSVTSNGSLLI 47
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLISRATL 429
P P+I+WLK G +++D + +G + T+
Sbjct: 1189 PEPQITWLKGGDVVKEDDRITTVFDGETCVLNITV 1223
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 536 APPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
+P P + W K+G + D V I E NL I
Sbjct: 319 SPKPVVKWYKNGQIVTYDSRVTIIGESNLEI 349
>SB_15637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 731
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 450 TYIPSYFTSKYIICLSISVSVYDTP 376
++ P+YFT KYI S S S+ DTP
Sbjct: 388 SHFPTYFTPKYI---SFSTSMTDTP 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,356
Number of Sequences: 59808
Number of extensions: 183371
Number of successful extensions: 1301
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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