Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A12
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.67 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.89 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   6.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 542 AAAPPPRISWLKHGSPLQQD 483
           A  P PR+ WLK+   L  D
Sbjct: 426 AGEPLPRVQWLKNDEALNHD 445


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 533  PPPRISWLKHGSPLQQDHNVLISAEGNLLI 444
            P P ++W   G+ LQ    +    EG+L I
Sbjct: 1304 PAPEVTWKVRGAVLQSSDRLRQLPEGSLFI 1333



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 533 PPPRISWLKHGSPLQQDHNVL 471
           P   +SWLK G PL  +  VL
Sbjct: 335 PIKTVSWLKDGKPLGLEEAVL 355



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = -3

Query: 533 PPPRISWLKHGSPLQQDHNVLISAEGNLLISRATLQVS 420
           P P+++W K       D+  L  +  ++ +   TL ++
Sbjct: 706 PKPQVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSIN 743


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -3

Query: 542 AAAPPPRISWLKHG-SPLQQDHNV 474
           A  PP  ISWLK G SP     N+
Sbjct: 636 AGDPPLTISWLKDGQSPFPLPPNL 659


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 163 LLLEVRPHLKNIFE 122
           +LL VRPHL+  FE
Sbjct: 251 ILLTVRPHLELTFE 264


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 163 LLLEVRPHLKNIFE 122
           +LL VRPHL+  FE
Sbjct: 251 ILLTVRPHLELTFE 264


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 533 PPPRISWLKHGSPL 492
           P P I+WLK G  L
Sbjct: 50  PRPEITWLKDGIEL 63


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 551 TPPAAAPPP 525
           TPP  APPP
Sbjct: 337 TPPKPAPPP 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,144
Number of Sequences: 438
Number of extensions: 1737
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)