Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A12
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    27   8.3  
At5g38590.2 68418.m04666 F-box family protein contains F-box dom...    27   8.3  
At5g38590.1 68418.m04667 F-box family protein contains F-box dom...    27   8.3  

>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 427 CKVARDISKFPSAEMRTL*SC*RGDPCL 510
           C    D+SK+P     T   C RGD CL
Sbjct: 399 CPFDHDLSKYPCNNFITKGFCYRGDSCL 426


>At5g38590.2 68418.m04666 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 471 HFSRREFTYIPSYFTSKYIICLSI-SVSVYDTP 376
           HFS  E  ++ S+F  K ++ L + SV++ D P
Sbjct: 111 HFSENENIFLSSFFACKSLVTLKLRSVTLRDIP 143


>At5g38590.1 68418.m04667 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 289

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 471 HFSRREFTYIPSYFTSKYIICLSI-SVSVYDTP 376
           HFS  E  ++ S+F  K ++ L + SV++ D P
Sbjct: 111 HFSENENIFLSSFFACKSLVTLKLRSVTLRDIP 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,825,348
Number of Sequences: 28952
Number of extensions: 130613
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)