Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A11
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    31   0.071
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c...    26   2.7  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   4.7  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 31.1 bits (67), Expect = 0.071
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 35  SLDELNDAPTRTTNNPLLKFRRPAIARQPG--TAITPRST 148
           SL   N+A T TT N    F +PA    PG  T +TP S+
Sbjct: 209 SLGSTNNASTSTTANSGFSFGKPATTSAPGSNTTVTPSSS 248


>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  DETATESLDELNDAPTRTTNNPL 85
           D   T SLDELN +PT  T N L
Sbjct: 45  DALTTISLDELNKSPTVFTKNLL 67


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 5   EAQQDETATESLDELNDAPTRTTNNPLLKFRRPAIARQPGTAITPRSTTQSV 160
           EA   E+ TESL E+ND+               +++  P T +TP+ TT  +
Sbjct: 157 EADSQESDTESLPEINDSSD------------VSLSDLPSTNVTPKKTTTQI 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,456
Number of Sequences: 5004
Number of extensions: 13475
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)