Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A11
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      27   6.1  

>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 29   TESLDELNDAPTRTTNNPLLKFRRPAIARQPGTAITPRSTTQSV 160
            TE+L+++ DAP   T N LL  +   +   PGT     ST +SV
Sbjct: 1391 TETLNDV-DAPRPLTPNHLLTMKLKVVLSPPGTFEPQISTAESV 1433


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 26  ATESLDELNDAPTRTTNNPL-LKFRRPAIARQPGTAITPRSTT 151
           A  ++D+LN+     TN  L +KF  P  +RQP   ++P  T+
Sbjct: 166 AQTAIDDLNNKTLPGTNVKLTVKFANPPNSRQPAMPLSPALTS 208


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 47   LNDAPTRTTNNPLLKFRRPAIARQPGTAIT 136
            LND P  T+ +P    R   + R+PG++ T
Sbjct: 1144 LNDIPVNTSGHPFETLRTLDVNRKPGSSAT 1173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,403,676
Number of Sequences: 59808
Number of extensions: 95380
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)