Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A11
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   7.1  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   7.1  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  DELNDAPTRTTNNPLLKFRRPAIARQPGTAITPRS 145
           ++ ND+ T + NNP + + + A A  P +   P S
Sbjct: 38  EKTNDSATSSQNNPPISYHQYATASSPSSRSQPPS 72


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 41  DELNDAPTRTTNNPLLKFRRPAIARQPGTAITPRS 145
           ++ ND+ T + NNP + + + A A  P +   P S
Sbjct: 38  EKTNDSATSSQNNPPISYHQYATASSPSSRSQPPS 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,534,883
Number of Sequences: 27780
Number of extensions: 71271
Number of successful extensions: 190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)