Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A10
         (243 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   0.63 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   1.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    20   4.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    20   4.4  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 0.63
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 120 GLGFAIIPHRTRNS**ARVISSR*LPPCPLYTP 218
           G G  ++P R  N   A V+ ++   P PL  P
Sbjct: 169 GTGVQLVPTRLANGDIALVLPTQGASPLPLLVP 201


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 40  TRATLKESACSPWP 81
           TR TLK +  SP+P
Sbjct: 256 TRTTLKNNRASPYP 269


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 49  TLKESACSPWPRG 87
           T+K ++C P P G
Sbjct: 351 TIKHTSCIPTPNG 363


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 49  TLKESACSPWPRG 87
           T+K ++C P P G
Sbjct: 351 TIKHTSCIPTPNG 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,226
Number of Sequences: 336
Number of extensions: 1319
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3642386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)