Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A10
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   0.61 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   1.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    24   3.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    23   4.3  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    23   4.3  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    23   7.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   9.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   9.9  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    22   9.9  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 92  PGPLGQGEHADSFSVARVRPRTSKGITDPR 3
           PG LG    + +  +  V+PRT +G+ + R
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGLKNSR 190


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 208 KGQGGNQRELMTRAY*EFLVLWGIIANPNPQHE 110
           +   GN+ E   R   EFL+ W  + N  P  +
Sbjct: 487 RNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQ 519


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 134 CKPQSPARRSFNGLPGPL 81
           C+P+ P   SFN  PG L
Sbjct: 318 CEPEYPPDTSFNSSPGRL 335


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 221 GRCVQRAGR*STRAYDSRLLGIPRPMGDNCKPQSPARRSFNG---LPGPLGQ 75
           GR   R G  ++ A  +      +  GD  +PQSP+ RS      LP  LG+
Sbjct: 621 GRSHVRTGSNNSEAPLAAKTSTTKRNGDLLEPQSPSLRSHKSRLHLPSSLGK 672


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 148 LWGIIANPNPQHEGVST 98
           LWGI+  P P  EG  T
Sbjct: 226 LWGILQPPEPSAEGPFT 242


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 208 KGQGGNQRELMTRAY*EFLVLWGIIA 131
           +   GN+ E   R   EFL+ W  +A
Sbjct: 567 RSSDGNEHETSRRIKTEFLIQWSSLA 592


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 158 IPRPMGDNCKPQSPARRSFNGLPGP 84
           IP P+ +   P +PA+      P P
Sbjct: 896 IPAPVAEPAPPAAPAKEVVEKAPSP 920


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 154  LVLWGIIANPNPQHEGVSTG 95
            L  +G I NPNP+   +S G
Sbjct: 1904 LYKFGAIPNPNPEIRALSLG 1923


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 165 TRNSSSYGG*LQTPIPSTKEFQRVARASRP 76
           TR++      LQ+ +PS ++  R+   SRP
Sbjct: 466 TRSAVPLESPLQSTLPSYEDVARIEHLSRP 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,672
Number of Sequences: 5004
Number of extensions: 20527
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)