Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A10
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 0.91
05_02_0122 - 6840840-6841307 28 0.91
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 1.2
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 1.2
11_06_0344 + 22540436-22540737,22541304-22543545 27 1.6
08_02_0226 - 14480461-14481199,14481399-14482243 27 2.8
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 27 2.8
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 26 3.7
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 26 3.7
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 26 3.7
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 26 3.7
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106... 26 4.9
07_03_1107 - 24024387-24024497,24025799-24026410 26 4.9
01_06_1806 + 40012952-40016836 26 4.9
05_05_0257 + 23651353-23651733,23651827-23651958 25 6.4
01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474... 25 6.4
08_01_0955 + 9478018-9478773 25 8.5
05_07_0359 - 29539294-29540832,29542366-29542518 25 8.5
05_05_0366 + 24442227-24442472,24442549-24442734,24442818-244429... 25 8.5
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.3 bits (60), Expect = 0.91
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 176 DSRLL-GIPRPMGDNCKPQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTSK 21
DS LL + P DN K Q + + G G + + ++S S ARV +S+
Sbjct: 332 DSHLLVDVEEPTSDNLKDQIGSNKKKLGSSGQKTKSQQSESSSTARVSSESSE 384
>05_02_0122 - 6840840-6841307
Length = 155
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 236 IGSSDGRCVQRAGR*STRAYDSRLLGIPRPMG 141
+G+ G C ++R Y S L+G+PR +G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 ARGSVMPLDVLGRTRATLKESACSP--WPRGPGNPLKLLRAGDWGLQLSPIGRGIPSKRE 174
+RG + L GR T + +P WP G G+P A P+ R ++RE
Sbjct: 1064 SRGGAVGLSAAGRMLETPGQPHVAPNGWPAGHGHPASGTLAAAMACSSRPVARQQGNRRE 1123
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 128 PQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTS 24
PQ P F GLP +G +H D ++A P S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 37 RTRATLKESACSPWPRGPGNPLKLLRAGDWGLQLSPIGRGIPSKRES*ARVDYLPALCTH 216
R R+ + PWP G + +K L A D S + G P S + + +C
Sbjct: 136 RIRSVARSCCSHPWPNGLVHEVKPLGATDSERLFSAVAHGWPRPANSGRVSNEILRVCDG 195
Query: 217 RPSLL 231
P L+
Sbjct: 196 TPLLI 200
>08_02_0226 - 14480461-14481199,14481399-14482243
Length = 527
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 100 LKLLRAGDWGLQLSPIGRGIPSKRES*ARVDYLPA 204
L + R+G+WG++ +PI G S S +R LPA
Sbjct: 216 LLVFRSGEWGVKRAPINHGSGSGSSS-SRGHDLPA 249
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 128 PQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTSKG 18
PQ S+ GL P+G+ + AD F +AR+ G
Sbjct: 301 PQKQEGMSYVGLHVPVGRVQAADMFELARLADEYGSG 337
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 158 IPRPMGDNCKPQSPARRSFNGLPGPLGQGEH 66
+P P+ KP P + +P P G GEH
Sbjct: 31 VPAPVAAVSKPGCPTKCGAVDIPFPFGIGEH 61
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 128 PQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTSKG 18
PQ S+ GL P+G+ + AD F +AR+ G
Sbjct: 461 PQKQEGLSYVGLHVPVGRVQAADMFELARLADEYGSG 497
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 148 LWGIIANPNPQHEGVSTGCPGL*ARENML 62
LW +++ P P+++ + G PG R +L
Sbjct: 1112 LWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 128 PQSPARRSFNGLPGPLGQGEHADSF--SVARVRPRTSKGITDPR 3
P++P R S +G P P G A SF S+ PR+S + R
Sbjct: 20 PETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRSSAQVQPAR 63
>10_01_0085 +
1061962-1062141,1062283-1062431,1062734-1062819,
1062986-1063113,1063213-1063341,1063428-1063495,
1063575-1063812
Length = 325
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 79 PRGPGNPLKLLRAGDWG 129
P G PL+LL GDWG
Sbjct: 31 PVAAGAPLRLLVVGDWG 47
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 131 KPQSPARRSFNGLPGPLGQGEHADS 57
K ++PA S PGP G G ADS
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADS 203
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 158 IPRPMGDNCKPQSPARRSFNGLPGPLGQGEHAD 60
+P+ +G NCK + SFN L GP+ + E AD
Sbjct: 345 MPKELG-NCKKLTVINLSFNALIGPIPE-EFAD 375
>05_05_0257 + 23651353-23651733,23651827-23651958
Length = 170
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 128 PQSPARRSFNGLPGPLGQGEHADS 57
PQ+P RR G+P P+ G + +S
Sbjct: 18 PQTPPRRRRTGVPVPILHGNNCNS 41
>01_06_0874 +
32646039-32646269,32646351-32646450,32647400-32647461,
32647503-32647609,32647689-32647839,32647925-32648073,
32648557-32648657,32648730-32648887,32648968-32649015,
32649028-32649142,32649212-32649543
Length = 517
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 83 LGQGEHADSFSVARVRPRTSK 21
+G GEH D F V V+P S+
Sbjct: 278 IGTGEHIDEFEVFDVKPFVSR 298
>08_01_0955 + 9478018-9478773
Length = 251
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 9 VCDALRCPGPHARYTEG 59
VCD R PG RYT G
Sbjct: 40 VCDGCREPGEGTRYTSG 56
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 34 GRTRATLKESACSPWPRGPGNPLK 105
G R L + A S RGPG+P K
Sbjct: 394 GEVRCLLSDGASSMGNRGPGSPRK 417
>05_05_0366 +
24442227-24442472,24442549-24442734,24442818-24442983,
24443109-24443560
Length = 349
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 232 VVATGGVYKGQGGNQRELMTRAY*EFL 152
V+ATGG+++ G + + +TR Y E L
Sbjct: 281 VLATGGLFQSDGSLRDDPVTRGYVEKL 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,483
Number of Sequences: 37544
Number of extensions: 184600
Number of successful extensions: 415
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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