Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A10
         (243 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   0.17 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    26   0.22 
Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.           24   0.88 
AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    21   6.2  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQG 72
           +S  +G+P P G    P  P      G PG  G G
Sbjct: 469 ESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYG 503



 Score = 25.4 bits (53), Expect = 0.29
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 143 GDNCKPQSPARRSFNGLPGPLG 78
           G  C P+  A +   GLPGP+G
Sbjct: 91  GGCCLPKCFAEKGNRGLPGPMG 112



 Score = 25.0 bits (52), Expect = 0.38
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 167 LLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHAD 60
           L G+P P G+      P R    G+PG  G +GE  D
Sbjct: 236 LEGLPGPQGEVGPRGFPGRPGEKGVPGTPGVRGERGD 272


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 14/53 (26%), Positives = 18/53 (33%)
 Frame = -2

Query: 161 GIPRPMGDNCKPQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTSKGITDPR 3
           G+P  +G+      P     NG PG  GQ          R  P    G   P+
Sbjct: 675 GLPGMVGEKGDRGLPGMSGLNGAPGEKGQKGETPQLPPQRKGPPGPPGFNGPK 727



 Score = 23.4 bits (48), Expect = 1.2
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
 Frame = -2

Query: 164 LGIPRPMGDNCKPQSPARRSFNGLPGPLG-------QGEHADSFSVARVRPRTSKGITD 9
           LG     GD        R   +GLPGP G       QGE  D      + P+  KG  D
Sbjct: 590 LGPQGEKGDRGDSGLMGRPGNDGLPGPQGQRGLPGPQGEKGDQGPPGFIGPKGDKGERD 648



 Score = 23.0 bits (47), Expect = 1.5
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
 Frame = -2

Query: 161 GIPRPMGDNCKPQSPARRSFNGLP---GPLGQGEHADSFSVARVRPRTSKG 18
           G     G N +P  P  R  +G+P   GP G    A      R  P+  KG
Sbjct: 308 GAASEKGQNGEPGVPGLRGNDGIPGLEGPSGPKGDAGVPGYGRPGPQGEKG 358



 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
 Frame = -2

Query: 161 GIPRPMGDNCKPQSPARRSFNGLPGPLGQ----GEHADSFSVAR 42
           G    MG    P  P     NGLPG  G     GE  D+  V +
Sbjct: 503 GAKGEMGIQGLPGLPGPAGLNGLPGMKGDMGPLGEKGDACPVVK 546



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 161 GIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
           G+    GD      P R    GLPGP G+
Sbjct: 761 GLQGLRGDVGPEGRPGRDGAPGLPGPKGE 789



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 161 GIPRPMGDNCKPQSPARRSFNGLPG 87
           G P P G    P +P R   +G+ G
Sbjct: 161 GEPGPKGPAGHPGAPGRPGVDGVKG 185


>Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 116 ARRSFNGLPGPLGQGEHADSFSVARV 39
           A RS + L  PLG   HA   +V RV
Sbjct: 91  AGRSTSSLTVPLGTSRHASGGTVVRV 116


>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
          carrier protein AP-1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 3  TRVCDALRCP 32
          T +CD L+CP
Sbjct: 54 TIICDTLKCP 63


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,489
Number of Sequences: 2352
Number of extensions: 5408
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 11861721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)