Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_A10
(243 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type ... 27 4.6
AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA... 27 4.6
V00200-1|CAA23486.2| 469|Drosophila melanogaster collagen protein. 26 6.1
M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collag... 26 6.1
M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type I... 26 6.1
J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV pro-co... 26 6.1
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 26 6.1
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 26 6.1
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 26 6.1
AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-P... 26 8.0
>U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type IV
alpha 2 protein.
Length = 1761
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 170 RLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
++ G P P GD P +P +GL GP G+
Sbjct: 1298 QIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGE 1329
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 164 LGIPRPMGDNCKPQSPARRSFNGLPGPLG 78
+G+ P G +P R GLPGP G
Sbjct: 557 IGLAGPRGVQGLQGNPGRAGHKGLPGPAG 585
>AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA
protein.
Length = 1940
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 170 RLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
++ G P P GD P +P +GL GP G+
Sbjct: 1300 QIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGE 1331
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 164 LGIPRPMGDNCKPQSPARRSFNGLPGPLG 78
+G+ P G +P R GLPGP G
Sbjct: 557 IGLTGPRGVQGLQGNPGRAGHKGLPGPAG 585
>V00200-1|CAA23486.2| 469|Drosophila melanogaster collagen protein.
Length = 469
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 262 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 319
>M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collagen
protein.
Length = 1775
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
+SRL+G+P P+G S R G PG GQ
Sbjct: 1330 ESRLVGLPGPIG---PAGSKGERGLAGSPGQPGQ 1360
>M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type IV
collagen protein.
Length = 1775
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
+SRL+G+P P+G S R G PG GQ
Sbjct: 1330 ESRLVGLPGPIG---PAGSKGERGLAGSPGQPGQ 1360
>J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV
pro-collagen protein.
Length = 1775
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLGQ 75
+SRL+G+P P+G S R G PG GQ
Sbjct: 1330 ESRLVGLPGPIG---PAGSKGERGLAGSPGQPGQ 1360
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -2
Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNGLPGPLG-QGEHADSFSVARVRPRTSKGITDP 6
D L G P G + P + F GL GP G G+ ++ P +G T P
Sbjct: 1023 DQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGP 1080
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 134 CKPQSPARRSFNGLPGPLG 78
C P+ A + GLPGPLG
Sbjct: 80 CVPKCIAEKGNRGLPGPLG 98
>AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-PA
protein.
Length = 2938
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 65 ADSFSVARVRPRTSKGITDPR 3
+ +FS RPRTS+G++ PR
Sbjct: 1673 SSAFSTQSERPRTSRGLSFPR 1693
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,523
Number of Sequences: 53049
Number of extensions: 293851
Number of successful extensions: 649
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 24,988,368
effective HSP length: 60
effective length of database: 21,805,428
effective search space used: 436108560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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