Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A10
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.71 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   6.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 58  ESACSPWPRGPGNPLKLLRA 117
           + + SP PR P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 149 DEEFLVSASHKLALITSLPFV--HTARRY 229
           D + LVSA+H+  L   L FV  HT+ ++
Sbjct: 101 DLDNLVSAAHEKGLKIILDFVPNHTSDQH 129


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 149 DEEFLVSASHKLALITSLPFV--HTARRY 229
           D + LVSA+H+  L   L FV  HT+ ++
Sbjct: 101 DLDNLVSAAHEKGLKIILDFVPNHTSDQH 129


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 170 RLLGIPRPMGDNCK 129
           +L GIP P  + CK
Sbjct: 583 KLKGIPDPXPNTCK 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,497
Number of Sequences: 438
Number of extensions: 1498
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)