Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A10
         (243 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    32   0.061
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    27   1.3  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    26   3.0  
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    26   4.0  
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p...    26   4.0  
At1g58120.1 68414.m06589 expressed protein                             25   5.3  
At1g48900.1 68414.m05478 signal recognition particle 54 kDa prot...    25   5.3  
At1g18160.1 68414.m02256 protein kinase family protein contains ...    25   5.3  
At1g15310.1 68414.m01832 signal recognition particle 54 kDa prot...    25   5.3  
At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase, p...    25   7.0  
At5g15460.2 68418.m01810 expressed protein                             25   7.0  
At5g15460.1 68418.m01809 expressed protein                             25   7.0  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    25   7.0  
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH...    25   9.3  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    25   9.3  
At1g05380.1 68414.m00546 PHD finger transcription factor, putative     25   9.3  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.9 bits (69), Expect = 0.061
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 152 RPMGDNCKPQSPARRSFNGLPGPLGQGEHADSFSVARVRPRTSKGIT 12
           R   D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 411 RVKDDSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 173 SRLLGIPRPMGDNCKPQSPARRSFNGLPGPL 81
           + L+G+  P   NCK       SFN L GPL
Sbjct: 268 AELIGLIPPELGNCKSLKSLMLSFNSLSGPL 298


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9   VCDALRCPGPHARYTEGISMFSL--A*RPGQPVETPSCWGLGFAIIPH 146
           V D  +    HA  T+ I+  +L  A RP +P +   CW     I+P+
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPN 124


>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 143 GDNCKPQSPARRSFNGLPGPLGQGEHADSFS 51
           G +CK   P   +  G+  PL +G +  SFS
Sbjct: 212 GSDCKFNHPDPTAIGGVDSPLYRGNNGGSFS 242


>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
           putative similar to laccase [Liriodendron
           tulipifera][GI:1621467]
          Length = 573

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 128 PQSPARRSFNGLPGPLGQGEHADSFSVARVRP 33
           P +    +FNGLPGPL      D++ +  V+P
Sbjct: 189 PNASDAHTFNGLPGPLYNCSTKDTYKL-MVKP 219


>At1g58120.1 68414.m06589 expressed protein
          Length = 420

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 206 RAGR*STRAYDSRLLGIPRPMGDNCKPQSPARRSF 102
           RA    +R Y  R   +P  MGDN   +S +RR F
Sbjct: 255 RAASRKSRTYFKRTRYLPDLMGDNLDLESYSRRVF 289


>At1g48900.1 68414.m05478 signal recognition particle 54 kDa protein
           3 / SRP54 (SRP-54C) identical to SP|P49967 Signal
           recognition particle 54 kDa protein 3 (SRP54)
           {Arabidopsis thaliana}
          Length = 495

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 83  LGQGEHADSFSVARVRPRTSK 21
           +G GEH D F V  V+P  S+
Sbjct: 273 IGTGEHMDEFEVFDVKPFVSR 293


>At1g18160.1 68414.m02256 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 992

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 36  PHARYTEGISMFSLA*RPGQPVETPS 113
           P A   E +  FSL  RP  P  TP+
Sbjct: 130 PEAAQIEAMKQFSLGSRPSAPENTPA 155


>At1g15310.1 68414.m01832 signal recognition particle 54 kDa protein
           1 / SRP54 (SRP-54) (SRP-54A) identical to
           Swiss-Prot:P37106 signal recognition particle 54 kDa
           protein 1 (SRP54) [Arabidopsis thaliana]
          Length = 479

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 83  LGQGEHADSFSVARVRPRTSK 21
           +G GEH D F V  V+P  S+
Sbjct: 273 IGTGEHMDEFEVFDVKPFVSR 293


>At5g60020.1 68418.m07526 laccase, putative / diphenol oxidase,
           putative similar to laccase LAC2-4, Liriodendron
           tulipifera, EMBL:LTU73106 [GI:1621467]
          Length = 577

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 107 SFNGLPGPLGQGEHADSFSVARVRP 33
           + NGLPGPL      D+F + RV+P
Sbjct: 191 TINGLPGPLYNCSAKDTFRL-RVKP 214


>At5g15460.2 68418.m01810 expressed protein
          Length = 124

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  TRATLKESACSPWPRGPGNPLKLLR 114
           T ATLKE+  + WPR   N  K ++
Sbjct: 30  TVATLKETVVAQWPRDKENGPKTVK 54


>At5g15460.1 68418.m01809 expressed protein
          Length = 124

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  TRATLKESACSPWPRGPGNPLKLLR 114
           T ATLKE+  + WPR   N  K ++
Sbjct: 30  TVATLKETVVAQWPRDKENGPKTVK 54


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 155 PRPMGDNCKPQSPARRSFNGLPGP 84
           P P   N +   P RRSF G P P
Sbjct: 19  PNPKPRNSEAGDPLRRSFGGNPFP 42


>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
           identical to photolyase/blue light photoreceptor PHR2
           [Arabidopsis thaliana] GI:3319288; contains Pfam domain,
           PF00875: deoxyribodipyrimidine photolyase
          Length = 447

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   ARGSVMPLDVLGRTRATLKESACSPWPR-GPGN 96
           A GS+ P  +    + T+  S  S  PR GPG+
Sbjct: 372 AMGSISPRSMFDELKKTISASTTSTTPRNGPGD 404


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 173 SRLLG-IPRPMGDNCKPQSPARRSFNGLPG 87
           +RL G IP  +GD C+     R S+N   G
Sbjct: 262 NRLTGWIPPEIGDTCRSLQNLRLSYNNFTG 291


>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
          Length = 600

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 176 DSRLLGIPRPMGDNCKPQSPARRSFNG 96
           D+ L+ +   MG  CKP+    R F G
Sbjct: 448 DNILVSVETAMGTICKPKDELSRHFRG 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,077,647
Number of Sequences: 28952
Number of extensions: 127353
Number of successful extensions: 308
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 59
effective length of database: 10,362,392
effective search space used: 217610232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)