Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A09
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              27   5.9  
SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)                  26   7.8  
SB_17927| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 113 PPLVQPCKLPPCIIPN 66
           P + +PC+LPPC  PN
Sbjct: 672 PKVTRPCQLPPCPPPN 687


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 137 PVSLHLHSPPLVQPCKLPPCIIPN 66
           PVS   H+PP+  P   PP   P+
Sbjct: 473 PVSTPSHTPPVSTPSNTPPVFTPS 496


>SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)
          Length = 305

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 119 HSPPLVQPCKLPPCIIPN 66
           HS PLV+P K   C++P+
Sbjct: 155 HSTPLVEPLKANSCLMPS 172


>SB_17927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 182 FRQMHLSQ*QHQRIAPVSLHLHSPPLVQP 96
           FR+  L Q   QR+ P+      PPL++P
Sbjct: 182 FRKPELFQHPFQRVIPIECRYPPPPLLRP 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,042
Number of Sequences: 59808
Number of extensions: 155166
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)