Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A09
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   0.72 
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    27   2.9  
Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   8.9  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   8.9  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -2

Query: 152 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTP 6
           ++ + P S H  + PP VQ    PPC    T    +     + P C  TP
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYTP 235


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -2

Query: 152 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLTP 6
           ++ I PV  H  + PP  Q    PPC    T    +     + P C  TP
Sbjct: 263 YRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYTP 312


>Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical
           protein F13D2.3 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +3

Query: 276 SWLALVLRLLPWWPFSSVV*HY 341
           S++ ++ RL+P+WPF +V+ HY
Sbjct: 229 SYVRMMSRLIPFWPF-TVLNHY 249


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 167 LSQ*QHQRIAPVSLHLHSPP 108
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 167 LSQ*QHQRIAPVSLHLHSPP 108
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 167 LSQ*QHQRIAPVSLHLHSPP 108
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 101 QPCKLPPCIIPNT 63
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,008,093
Number of Sequences: 27780
Number of extensions: 115567
Number of successful extensions: 268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)