Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A08
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.2  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.6  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 177 HHGVYKRTSPSGN*HFPLPNGWSPQAS*SH 88
           HH      + +    FPL  G SP AS  H
Sbjct: 24  HHHEQSAAAAAAYRSFPLSLGMSPYASSQH 53


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 111 TTHLGAENVNFQMETYVYKRRGDGT 185
           T  L   N N+   TY+ K  G G+
Sbjct: 272 TFTLSNSNTNYNPGTYINKEAGGGS 296


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 377 VSKCTRSETSSNWC 336
           VS C +  +SS WC
Sbjct: 135 VSSCHQGFSSSTWC 148


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 415 INSLGSRNAAWIWLV 371
           +N   S   AWIWL+
Sbjct: 455 LNDFISHQHAWIWLL 469


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 415 INSLGSRNAAWIWLV 371
           +N   S   AWIWL+
Sbjct: 455 LNDFISHQHAWIWLL 469


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 415 INSLGSRNAAWIWLV 371
           +N   S   AWIWL+
Sbjct: 455 LNDFISHQHAWIWLL 469


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 415 INSLGSRNAAWIWLV 371
           +N   S   AWIWL+
Sbjct: 455 LNDFISHQHAWIWLL 469


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,514
Number of Sequences: 336
Number of extensions: 2543
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)