Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A08
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   188   6e-49
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   187   1e-48
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.47 
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   3.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  188 bits (457), Expect = 6e-49
 Identities = 87/145 (60%), Positives = 108/145 (74%)
 Frame = +3

Query: 66  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 245
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 246 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 425
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 426 PAQDHQPITEASYVNIPVIALCNTD 500
           P  D Q I EAS+VNIPVIALC+TD
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTD 154



 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 508 LRFVDIAIPCNTKSSHSIG 564
           L  VD+AIP N K   SIG
Sbjct: 157 LNHVDVAIPINNKGYKSIG 175


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  187 bits (455), Expect = 1e-48
 Identities = 84/149 (56%), Positives = 110/149 (73%)
 Frame = +3

Query: 54  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 233
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 234 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 413
                 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 414 IVLDPAQDHQPITEASYVNIPVIALCNTD 500
           +V DP  D Q I EAS+VNIPVIALC+TD
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTD 153



 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 508 LRFVDIAIPCNTKSSHSIG 564
           L  VDIAIP N K   SIG
Sbjct: 156 LNHVDIAIPTNNKGRKSIG 174


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 402 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTD 500
           P L+++L+P ++     EA   ++P I + +TD
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTD 212


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 455 FSNWLMILSRVQNNQQPWFA 396
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,991
Number of Sequences: 5004
Number of extensions: 41493
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)