Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A08
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               233   1e-61
SB_588| Best HMM Match : p450 (HMM E-Value=0.17)                       28   6.1  
SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4)                    27   8.0  
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   27   8.0  
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   27   8.0  
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)                        27   8.0  
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)           27   8.0  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)                 27   8.0  
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)                   27   8.0  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.0  
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)          27   8.0  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  233 bits (569), Expect = 1e-61
 Identities = 107/151 (70%), Positives = 122/151 (80%)
 Frame = +3

Query: 48  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 227
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 228 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 407
                   E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 408 LLIVLDPAQDHQPITEASYVNIPVIALCNTD 500
           LLIV DP  DHQP+TEASYVNIPVIA CNTD
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTD 151



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 487 YATLTAPLRFVDIAIPCNTKSSHSIG 564
           +    +PLR VD+AIPCN K  HSIG
Sbjct: 147 FCNTDSPLRHVDVAIPCNNKGIHSIG 172


>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 414 IVLDPAQDHQPITEASYVNIPVIALCNTDCTSQ 512
           I+ + +Q++ P+    Y +IP +ALC  + T Q
Sbjct: 68  ILWEISQEYSPVILLWYYHIPFVALCGHELTRQ 100


>SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4)
          Length = 465

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 51  ICWETNTIARGSRHVTACEKLLEMCSIYSLKQVVDKPSRGDK 92


>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 349 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 390


>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 696

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 353 ICWETNTIARGSRHVTACEKLLEMCSIYSLKQVVDKPSRGDK 394


>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1126

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 335 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 376


>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
          Length = 296

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 228 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 269


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540  VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
            + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 1500 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 1541


>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
          Length = 1061

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 421 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 462


>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
          Length = 832

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 93  ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 134


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -3

Query: 362 RSETSSN-WCCASVGSKFKHSTLAKCT**DNKHISWILHGDNSTSSEYKLFPCTPKINYV 186
           RS  SS  + C + G  F H            ++S I H    T S  +LF C     + 
Sbjct: 229 RSHASSRPYSCPTCGKTFSH------------YVSLIQH--KKTHSSVRLFECKKCGKHF 274

Query: 185 RTVTTAFINVRLHLEINIFRSQMGGRRKH 99
           +  +T   ++ +H +I  F  +  G+R H
Sbjct: 275 KRSSTLSTHMLIHADIRPFSCEFCGKRFH 303


>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
          Length = 413

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 540 VAWDSN-VNKSERCSQCCIKLLLEC*HMKLQ*LVDDPEQGPK 418
           + W++N + +  R    C KLL  C    L+ +VD P +G K
Sbjct: 269 ICWETNTIARGSRHVTACEKLLEMCSIYSLEQVVDKPTRGDK 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,554
Number of Sequences: 59808
Number of extensions: 345030
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)