Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A08
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   176   1e-44
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   172   1e-43
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   172   1e-43
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   0.30 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.2  
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    27   8.7  
At4g03940.1 68417.m00557 expressed protein                             27   8.7  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  176 bits (428), Expect = 1e-44
 Identities = 81/144 (56%), Positives = 99/144 (68%)
 Frame = +3

Query: 69  LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 248
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEK          
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 249 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 428
            E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 429 AQDHQPITEASYVNIPVIALCNTD 500
             DHQPI E +  NIP+IA C+TD
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTD 155



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 502 APLRFVDIAIPCNTKSSHSIG 564
           +P+RFVDI IP N K  HSIG
Sbjct: 156 SPMRFVDIGIPANNKGKHSIG 176


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  172 bits (419), Expect = 1e-43
 Identities = 78/140 (55%), Positives = 97/140 (69%)
 Frame = +3

Query: 81  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 260
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 261 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 440
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 441 QPITEASYVNIPVIALCNTD 500
           QPI E +  NIP IA C+TD
Sbjct: 137 QPIKEGALGNIPTIAFCDTD 156



 Score = 33.1 bits (72), Expect = 0.13
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 502 APLRFVDIAIPCNTKSSHSIG 564
           +P+ FVDI IP N K  HSIG
Sbjct: 157 SPMGFVDIGIPANNKGKHSIG 177


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  172 bits (419), Expect = 1e-43
 Identities = 78/140 (55%), Positives = 97/140 (69%)
 Frame = +3

Query: 81  EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 260
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 261 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 440
            D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 441 QPITEASYVNIPVIALCNTD 500
           QPI E +  NIP IA C+TD
Sbjct: 137 QPIKEGALGNIPTIAFCDTD 156



 Score = 33.1 bits (72), Expect = 0.13
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 502 APLRFVDIAIPCNTKSSHSIG 564
           +P+ FVDI IP N K  HSIG
Sbjct: 157 SPMGFVDIGIPANNKGKHSIG 177


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 269 HISWILHGDNSTSSEYKLFPCTPKINYVRT 180
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 357 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 458
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 549 RLSVAWDSNVNKSERCSQCCIKLLLEC*HMK 457
           R +V W+       RC+ CC  L ++C H K
Sbjct: 589 RGNVLWNQKEALRYRCNVCCTTLHIDCLHGK 619


>At4g03940.1 68417.m00557 expressed protein 
          Length = 310

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 54  GGLDLLALSEEDVTKM--LAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTW 212
           G L LL  S+E   K   +   T +G   ++FQ+    Y+R G G + +  RR+W
Sbjct: 134 GVLALLQESQEKEAKTFKMYEATIVGTNYISFQINELNYRREGIGRN-LPRRRSW 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,778,120
Number of Sequences: 28952
Number of extensions: 228210
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)