Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A07
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora cras...    33   1.7  
UniRef50_UPI00004D5000 Cluster: Apolipoprotein-L6 (Apolipoprotei...    31   5.1  

>UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 1272

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 11  EGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKYT 157
           +G L +  G  I+ DA G+  + V  E  + RE  R  EEAR K+K  T
Sbjct: 669 DGTLPMDMGPDIDMDADGDMDMCVDQETEKRRERERYLEEARLKVKDVT 717


>UniRef50_UPI00004D5000 Cluster: Apolipoprotein-L6 (Apolipoprotein
           L-VI) (ApoL-VI).; n=1; Xenopus tropicalis|Rep:
           Apolipoprotein-L6 (Apolipoprotein L-VI) (ApoL-VI). -
           Xenopus tropicalis
          Length = 278

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 5   EDEGKLELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKYTP 160
           E E K E   G  +E+D +   K NVK +  +L E  +TF +  G++++  P
Sbjct: 4   EQESKTERTIGTTLEEDTTLLKK-NVKLQCKDLEEKLKTFVKELGEVQETLP 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,229,952
Number of Sequences: 1657284
Number of extensions: 3227454
Number of successful extensions: 7379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7374
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)