Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A07
         (336 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068500-1|AAH68500.1|  658|Homo sapiens large subunit GTPase 1 ...    29   2.7  
BC040119-1|AAH40119.1|  649|Homo sapiens LSG1 protein protein.         29   2.7  
BC015042-1|AAH15042.1|  648|Homo sapiens Unknown (protein for IM...    29   2.7  
AK002163-1|BAA92116.1|  642|Homo sapiens protein ( Homo sapiens ...    29   2.7  

>BC068500-1|AAH68500.1|  658|Homo sapiens large subunit GTPase 1
           homolog (S. cerevisiae) protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 71  KLNVKFEPGELREAARTFEEARGKIKK 151
           KLN+KF P E R    +FEE++ +IKK
Sbjct: 77  KLNIKFVPAEARTGLLSFEESQ-RIKK 102


>BC040119-1|AAH40119.1|  649|Homo sapiens LSG1 protein protein.
          Length = 649

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 71  KLNVKFEPGELREAARTFEEARGKIKK 151
           KLN+KF P E R    +FEE++ +IKK
Sbjct: 77  KLNIKFVPAEARTGLLSFEESQ-RIKK 102


>BC015042-1|AAH15042.1|  648|Homo sapiens Unknown (protein for
           IMAGE:3920630) protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 71  KLNVKFEPGELREAARTFEEARGKIKK 151
           KLN+KF P E R    +FEE++ +IKK
Sbjct: 77  KLNIKFVPAEARTGLLSFEESQ-RIKK 102


>AK002163-1|BAA92116.1|  642|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11301 fis, clone PLACE1009908, weakly similar to
           HYPOTHETICAL GTP-BINDING PROTEIN IN SEH1-PRP20
           INTERGENIC ).
          Length = 642

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 71  KLNVKFEPGELREAARTFEEARGKIKK 151
           KLN+KF P E R    +FEE++ +IKK
Sbjct: 77  KLNIKFVPAEARTGLLSFEESQ-RIKK 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,370,525
Number of Sequences: 237096
Number of extensions: 550245
Number of successful extensions: 1010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)