Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A07
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52410.2 68418.m06502 expressed protein                             30   0.44 
At5g52410.1 68418.m06503 expressed protein                             30   0.44 
At1g78940.1 68414.m09203 protein kinase family protein contains ...    27   3.1  

>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 5   EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 154
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 572 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 623


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 5   EDEGK--LELFSGVVIEKDASGENKLNVKFEPGELREAARTFEEARGKIKKY 154
           EDE +  L L + + +E++A    +   K E    RE A+  EEARG+ +KY
Sbjct: 321 EDENQEILRLQNELEVERNALSIARDWAKDEARRAREQAKVLEEARGRWEKY 372


>At1g78940.1 68414.m09203 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 680

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  GENKLNVKFEPGELREAARTFEEARGKIKKYT 157
           G N+L +KF   +    + TF E  G+   Y+
Sbjct: 215 GSNRLGIKFSDPDFLNESSTFSEESGRTSSYS 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,266,467
Number of Sequences: 28952
Number of extensions: 71424
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)