Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A06
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    29   0.33 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   7.0  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    24   9.3  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    24   9.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   9.3  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    24   9.3  

>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  LVKMNEVSAKELLVCPIIAITILESTI 163
           LVK  E +  ELL+CPI  IT+   T+
Sbjct: 95  LVKNEESTMSELLLCPICGITLESLTV 121


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 108  PKSYWYVR**R*QF*NRLFRYNKCNKVIYFLFYFFS*GWCNVFNII 245
            P +Y YVR       +  +  N C KV    FY+F   + N+F+++
Sbjct: 1293 PIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVV 1338


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 116 TLWQTPHSFSQVPSGLKLEF 57
           T W   H  SQ P GL+  F
Sbjct: 125 TYWVHSHDMSQYPDGLRTPF 144


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  LKKGVTVKNETQVSNLMALVKMNEVSAKELLVCPIIAITIL 151
           +K+G + K+  +V   +    M  VSA    +C II I +L
Sbjct: 52  IKRGFSGKDMNKVEKYVIPETMGAVSALVYFMCMIIFIPVL 92


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 344 SHLYSLPAPANLKQDANGVNISNLRLQRNFRFIYNIK 234
           S    +  P N  QD+N  +I +L    N+ F+ N+K
Sbjct: 226 SEFLQMCRPINTTQDSNEHSIGSLFFYLNYNFV-NVK 261


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  ECVLKKGVTVKNETQVSNLMALVKMNEVSAKELL 121
           +  L+K +  KN   + N+M  +K   V+ +ELL
Sbjct: 10  KAALEKAIQGKNIETIINIMTRLKNEVVATEELL 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,543
Number of Sequences: 5004
Number of extensions: 23135
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)