Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A06
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   2.6  
AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical...    27   6.0  

>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 20  ECVLKKGVTVKNETQVSNLMALVKMNEVSA 109
           EC+L+ GV++KN   ++ L  L  M+++++
Sbjct: 518 ECLLENGVSMKNFLSINRLENLYNMDDINS 547


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 20  ECVLKKGVTVKNETQVSNLMALVKMNEVSA 109
           EC+L+ GV++KN   ++ L  L  M+++++
Sbjct: 234 ECLLENGVSMKNFLSINRLENLYNMDDINS 263


>AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical
           protein Y51H4A.21 protein.
          Length = 131

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 174 KCNKVIYFLFYFFS 215
           KC K+IYFLF  FS
Sbjct: 106 KCKKIIYFLFICFS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,623
Number of Sequences: 27780
Number of extensions: 127398
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)