Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_A06
         (380 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    29   0.79 
At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1 pr...    27   5.6  

>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 8   EVLCECVLKKGVTVKNETQVSNLMALVKMNEVSAKELLVCPIIAITI 148
           EVLCE    K  TV+ E      +A + + E  AKE+ V  +IAIT+
Sbjct: 143 EVLCEVETDKA-TVEMECMEEGFLAKI-VKEEGAKEIQVGEVIAITV 187


>At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1
           protein (CUC1) identical to CUP-SHAPED COTYLEDON1 (CUC1)
           (GI:12060422)  [Arabidopsis thaliana]
          Length = 310

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   EEVLCECVLKKGVTVKNETQVSNLMALVKMNEVSAKELLVCPII 136
           E VLC+  LK GV  +    +S+  +     E S+    + PII
Sbjct: 163 EWVLCKVCLKSGVVSRETNLISSSSSSAVTGEFSSAGSAIAPII 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,822,433
Number of Sequences: 28952
Number of extensions: 110147
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)